CK739855

Overview
NameCK739855
Unique NameCK739855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5170 contig Csv1_Contig5170:566..1096. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_SOLTU (Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 8.835e-90
Identity = 158/176 (89.77%), Postives = 169/176 (96.02%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVAGLAPGTG+LTVFTNE GG+IDDSV+TKV +DHIYLVVNAGCRDKDLAHIE HMKSF +KGGDVSWHIHDERSLLALQGPLAAPVLQ+LTKDDLSK+YFGEFR+LDING  CFLTRTGYTGEDGFEISVPSE A+DLAKA+LEKSEGK+RLTGLGARDSLRLEAGLCLYGNDME
Sbjct:  107 DVAGLAPGTGSLTVFTNEKGGAIDDSVVTKVTNDHIYLVVNAGCRDKDLAHIEEHMKSFKSKGGDVSWHIHDERSLLALQGPLAAPVLQYLTKDDLSKMYFGEFRVLDINGAPCFLTRTGYTGEDGFEISVPSENALDLAKALLEKSEGKIRLTGLGARDSLRLEAGLCLYGNDME 282          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_ARATH (Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 1.968e-89
Identity = 160/176 (90.91%), Postives = 168/176 (95.45%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVAGLAPGTG+LTVFTNE GG+IDDSVITKV D+HIYLVVNAGCRDKDLAHIE HMK+F +KGGDVSWHIHDERSLLALQGPLAAPVLQHLTK+DLSKLYFG F+ILDING +CFLTRTGYTGEDGFEISVP E AVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME
Sbjct:  108 DVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDEHIYLVVNAGCRDKDLAHIEEHMKAFKSKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKEDLSKLYFGNFQILDINGSTCFLTRTGYTGEDGFEISVPDEHAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 283          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_FLATR (Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 7.480e-89
Identity = 159/176 (90.34%), Postives = 166/176 (94.32%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVAGLAPGTG+LTVFTNE GG+IDDSVITKV DDHIYLVVNAGCRDKDLAHIE HMK+F AKGGDVSWHIHDERSLLALQGPLA   LQHLTKDDLSK+YFG+FRI+DI+G  CFLTRTGYTGEDGFEISVPSE AVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME
Sbjct:  107 DVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLVVNAGCRDKDLAHIEQHMKAFKAKGGDVSWHIHDERSLLALQGPLAGSTLQHLTKDDLSKMYFGDFRIIDISGSKCFLTRTGYTGEDGFEISVPSENAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 282          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_PEA (Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 2.176e-88
Identity = 157/176 (89.20%), Postives = 166/176 (94.32%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVA LA GTGTLTVFTNE GG+IDDSVITKV DDH+YLVVNAGCRDKDLAHIE HMK+F AKGGDVSWHIHDERSLLALQGPLAAPVLQHLTK+DLSKLYFGEFR+LDING  CFLTRTGYTGEDGFEISVPSE  V+LAKA+LEKSEGK+RLTGLGARDSLRLEAGLCLYGND+E
Sbjct:  108 DVAALAHGTGTLTVFTNEKGGAIDDSVITKVTDDHLYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKEDLSKLYFGEFRVLDINGSQCFLTRTGYTGEDGFEISVPSEHGVELAKALLEKSEGKIRLTGLGARDSLRLEAGLCLYGNDLE 283          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_FLAAN (Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 2.842e-88
Identity = 158/176 (89.77%), Postives = 166/176 (94.32%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVAGLAPGTG+LTVFTNE GG+IDDSVITKV DDHIYLVVNAGCRDKDLAHIE HMK+F AKGGDVSWHI+DERSLLALQGPLA   LQHLTK+DLSK+YFG+FRI+DING  CFLTRTGYTGEDGFEISVPSE AVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME
Sbjct:  107 DVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIYDERSLLALQGPLAGSTLQHLTKEDLSKMYFGDFRIIDINGSKCFLTRTGYTGEDGFEISVPSENAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 282          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_FLAPR (Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.080e-87
Identity = 157/176 (89.20%), Postives = 165/176 (93.75%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            DVAGL PGTG+LTVFTNE GG+IDDSVITKV DDHIYLVVNAGCRDKDLAHIE HMK+F AKGGDVSWHI+DERSLLALQGPLA   LQHLTK+DLSK+YFG+FRI+DING  CFLTRTGYTGEDGFEISVPSE AVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME
Sbjct:  107 DVAGLRPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIYDERSLLALQGPLAGSTLQHLTKEDLSKMYFGDFRIIDINGSKCFLTRTGYTGEDGFEISVPSENAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 282          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_MESCR (Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.011e-85
Identity = 152/176 (86.36%), Postives = 164/176 (93.18%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            D+AGLAPGTGTL+V TNE GG+IDD+VITKV DDHIYLVVNAGCR+KDLAHIE HMK+F AKGGDVSWHIHDERSLLALQGPLAAPVLQHLTK+DLSK YFG+F  LDING  C+LTRTGYTGEDGFEISVP+E AVDLAKA+LEKSEGKVRLTG GARDSLRLEAGLCLYGND+E
Sbjct:  108 DIAGLAPGTGTLSVLTNEKGGAIDDTVITKVTDDHIYLVVNAGCREKDLAHIEEHMKAFKAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKEDLSKFYFGQFTFLDINGFPCYLTRTGYTGEDGFEISVPNEYAVDLAKAMLEKSEGKVRLTGRGARDSLRLEAGLCLYGNDLE 283          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_BOVIN (Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 8.658e-45
Identity = 96/177 (54.24%), Postives = 124/177 (70.06%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVS-CFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            D+A L P  GTL++FTNE GG +DD ++T   + H+Y+V NAGCR+KDL  ++  ++    KG DV+  + D  +LLALQGP AA VLQ    DDL KL F    ++++ GVS C +TR GYTGEDG EISVP+  AV LA A+L+  E  V+L GL ARDSLRLEAGLCLYGND++
Sbjct:   99 DIAELKPNQGTLSLFTNEAGGILDDLIVTSASEGHLYVVSNAGCREKDLTLMQDKVRELQNKGSDVALEVMD-NALLALQGPTAAQVLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPAAEAVHLAAALLKNPE--VKLAGLAARDSLRLEAGLCLYGNDID 272          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_MOUSE (Aminomethyltransferase, mitochondrial OS=Mus musculus GN=Amt PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 7.329e-44
Identity = 95/177 (53.67%), Postives = 123/177 (69.49%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVS-CFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            D+A L P  GTL++FTNE GG +DD +++   + H+Y+V NAGCRDKDLA ++  +K F  +G DV   +  E +LLALQGP A  VLQ    DD+ KL F    ++++ GVS C +TR GYTGEDG EISVP+  AV LA  +L+  E  V+L GL ARDSLRLEAGLCLYGND++
Sbjct:  105 DIAELRPNQGTLSLFTNEAGGILDDLIVSNTSEGHLYVVSNAGCRDKDLALMQDKVKEFQNRGLDVGLEV-VENALLALQGPTATQVLQAGVTDDMKKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPATGAVHLATTLLKNPE--VKLAGLAARDSLRLEAGLCLYGNDID 278          
BLAST of CK739855 vs. ExPASy Swiss-Prot
Match: GCST_HUMAN (Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.751e-43
Identity = 96/177 (54.24%), Postives = 122/177 (68.93%), Query Frame = 3
Query:    3 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVS-CFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDME 530
            D+A L P  GTL++FTNE GG +DD ++T   + H+Y+V NAGC +KDLA ++  ++    +G DV   + D  +LLALQGP AA VLQ    DDL KL F    ++++ GVS C +TR GYTGEDG EISVP   AV LA AIL+  E  V+L GL ARDSLRLEAGLCLYGND++
Sbjct:  105 DIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVLD-NALLALQGPTAAQVLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILKNPE--VKLAGLAARDSLRLEAGLCLYGNDID 278          
The following BLAST results are available for this feature:
BLAST of CK739855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_SOLTU8.835e-9089.77Aminomethyltransferase, mitochondrial OS=Solanum t... [more]
GCST_ARATH1.968e-8990.91Aminomethyltransferase, mitochondrial OS=Arabidops... [more]
GCST_FLATR7.480e-8990.34Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_PEA2.176e-8889.20Aminomethyltransferase, mitochondrial OS=Pisum sat... [more]
GCST_FLAAN2.842e-8889.77Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_FLAPR1.080e-8789.20Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_MESCR1.011e-8586.36Aminomethyltransferase, mitochondrial OS=Mesembrya... [more]
GCST_BOVIN8.658e-4554.24Aminomethyltransferase, mitochondrial OS=Bos tauru... [more]
GCST_MOUSE7.329e-4453.67Aminomethyltransferase, mitochondrial OS=Mus muscu... [more]
GCST_HUMAN4.751e-4354.24Aminomethyltransferase, mitochondrial OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6246 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739855 ID=CK739855; Name=CK739855; organism=Citrus sinensis; type=EST; length=531bp
CTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGTCTTTACA
AATGAAAATGGGGGTTCAATCGATGATTCAGTTATTACCAAGGTGAAGGA
TGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAGGATCTTG
CTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGTGGGGATGTC
TCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCAGGGCCCCCT
TGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGCAAGTTAT
ACTTCGGGGAATTCCGAATTTTGGATATCAATGGTGTATCCTGCTTTCTC
ACTAGGACAGGGTACACTGGTGAAGATGGATTTGAAATCTCTGTTCCATC
TGAGCGTGCAGTGGATCTTGCCAAAGCAATTCTGGAGAAATCTGAAGGAA
AGGTGAGGTTGACAGGTCTCGGTGCTCGAGACAGTCTCCGACTTGAAGCT
GGCTTATGTTTATATGGTAATGACATGGAAC
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