CK739860

Overview
NameCK739860
Unique NameCK739860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:699..1217. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739860 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.998e-37
Identity = 42/63 (66.67%), Postives = 55/63 (87.30%), Query Frame = 1
Query:   85 CFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 273
            CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  397 CFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          

HSP 2 Score: 60.077 bits (144), Expect = 2.998e-37
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 3
Query:    3 KPPAVCDNYYSCPESNTCCCVFEYGNLLLCMGMLP 107
            KPP  CD+YY+CPESNTCCC+FEYG      G  P
Sbjct:  370 KPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCP 404          
BLAST of CK739860 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.491e-27
Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 1
Query:   82 SCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 276
            SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  277 SCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CK739860 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.123e-25
Identity = 45/56 (80.36%), Postives = 52/56 (92.86%), Query Frame = 1
Query:   85 CFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 252
            C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  389 CYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CK739860 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 5.398e-20
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   85 CFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 249
            C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  408 CLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CK739860 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 6.828e-15
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   85 CFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 252
            C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  417 CIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of CK739860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RD21A_ARATH2.998e-3766.67Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC3.491e-2775.38Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYA_ORYSJ1.123e-2580.36Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
ORYB_ORYSJ5.398e-2069.09Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ6.828e-1550.00Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6251 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739860 ID=CK739860; Name=CK739860; organism=Citrus sinensis; type=EST; length=520bp
CAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTGAGAGCAAC
ACTTGCTGCTGTGTCTTTGAGTATGGTAACCTCTTGCTTTGCATGGGGAT
GCTGCCCGCTTGAGGCTGCCACCTGCTGTGATGACCACTATAGCTGCTGC
CCACATGACTATCCCATCTGTAATGTTCGTGCTGGGACCTGCTTGATGAG
CAAGGACAACCCATTGGGAGTGAGGGCATTACGACGCACCCCTGCTAAAC
CTTACTGGGCTCATGGAAATCAAGGTGGAAGTAGCAGTGCTTAATTATAG
TTGGCACTGTAAGAGCAGTGGAAGGCCGAAGGGAGGATGAAAATATTCGT
GCTTGTGAATGAGTTTCTCCCCGGCCTTAGTTCATTCTACTGCATTTCAT
TCCAAACGTTAATGTACCGGCAGGTGGATGGTCTGTTAAATATTTATTCC
GACGTTGGTTTGGTATATAGCGTTGTAAGTTATCTATCTGCGTTGAATCT
GAACAATGCACAAACAAATT
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