CK739864

Overview
NameCK739864
Unique NameCK739864
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3405 contig Csv1_Contig3405:999..1427. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739864 vs. ExPASy Swiss-Prot
Match: MSSP2_ARATH (Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 2.760e-40
Identity = 86/142 (60.56%), Postives = 92/142 (64.79%), Query Frame = 3 
Query:    3 GINGVLYYTPQILEQAGVGVXXXXXXXXXXXXXXXXXXXTTLLMLPSIAVAMRLMDISGRRXXXXXXXXXXXXXXXXXXXXXXXKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGD 428
            GINGVLYYTPQILEQAGVG+                   TT +MLP+IAVAMRLMD+SGRR                        M S+VHA +STVSVVLYFC FVMGFGP PNILCSEIFPTRVRGICIAICAL FWI D
Sbjct:  522 GINGVLYYTPQILEQAGVGILLSNMGISSSSASLLISALTTFVMLPAIAVAMRLMDLSGRRTLLLTTIPILIASLLVLVISNLVHMNSIVHAVLSTVSVVLYFCFFVMGFGPAPNILCSEIFPTRVRGICIAICALTFWICD 663
[Close]
BLAST of CK739864 vs. ExPASy Swiss-Prot
Match: MSSP1_ARATH (Monosaccharide-sensing protein 1 OS=Arabidopsis thaliana GN=MSSP1 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 4.406e-38
Identity = 81/142 (57.04%), Postives = 92/142 (64.79%), Query Frame = 3 
Query:    3 GINGVLYYTPQILEQAGVGVXXXXXXXXXXXXXXXXXXXTTLLMLPSIAVAMRLMDISGRRXXXXXXXXXXXXXXXXXXXXXXXKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGD 428
            GINGVLYYTPQILE+AGV +                   TTLLMLP+I VAMRLMD+SGRR                        +  VV+A++ST  VVLYFC FVMG+GPIPNILCSEIFPTRVRG+CIAICA+VFWIGD
Sbjct:  525 GINGVLYYTPQILERAGVDILLSSLGLSSISASFLISGLTTLLMLPAIVVAMRLMDVSGRRSLLLWTIPVLIVSLVVLVISELIHISKVVNAALSTGCVVLYFCFFVMGYGPIPNILCSEIFPTRVRGLCIAICAMVFWIGD 666
[Close]
BLAST of CK739864 vs. ExPASy Swiss-Prot
Match: MSSP3_ARATH (Monosaccharide-sensing protein 3 OS=Arabidopsis thaliana GN=MSSP3 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.499e-27
Identity = 67/142 (47.18%), Postives = 77/142 (54.23%), Query Frame = 3 
Query:    3 GINGVLYYTPQILEQAGVGVXXXXXXXXXXXXXXXXXXXTTLLMLPSIAVAMRLMDISGRRXXXXXXXXXXXXXXXXXXXXXXXKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGD 428
            GINGV+YYTPQILE+ GV                     TTLLMLP I V+MR + +S                           +G  ++A IST SV +Y  CFVMGFG IPNILCSEIFPT VRG+CI ICAL FWI D
Sbjct:  526 GINGVMYYTPQILEETGVSSLLTNLGISAESASLLISALTTLLMLPCILVSMRSLMLS--------TIPILILSLVTLVIGSLVNLGGSINALISTASVTVYLSCFVMGFGAIPNILCSEIFPTSVRGLCITICALTFWICD 659
The following BLAST results are available for this feature:
BLAST of CK739864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MSSP2_ARATH2.760e-4060.56Monosaccharide-sensing protein 2 OS=Arabidopsis th... [more]
MSSP1_ARATH4.406e-3857.04Monosaccharide-sensing protein 1 OS=Arabidopsis th... [more]
MSSP3_ARATH3.499e-2747.18Monosaccharide-sensing protein 3 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6255 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739864 ID=CK739864; Name=CK739864; organism=Citrus sinensis; type=EST; length=429bp
CTGGCATAAATGGGGTTCTCTACTACACTCCTCAAATTCTTGAGCAGGCA
GGTGTTGGAGTTCTTCTTTCAAATTTGGGCATTAGTTCAGCTTCAGCATC
ACTGCTTATCAGTGGCATCACAACCTTATTGATGCTTCCATCTATAGCTG
TAGCCATGAGGCTCATGGATATTTCTGGCAGAAGGACTTTGCTGCTCAGC
ACAATCCCCATCTTAATAACATCTCTTGTTGTCCTAGTCCTGTCAAGTGT
TATAAAGATGGGTTCTGTTGTGCATGCATCAATCTCGACTGTCAGTGTTG
TGTTATATTTCTGTTGCTTTGTCATGGGTTTTGGGCCAATCCCTAACATA
CTCTGTTCGGAGATCTTCCCCACCAGGGTACGTGGCATCTGCATTGCCAT
ATGTGCCCTTGTATTTTGGATAGGGGACA
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