CK739865

Overview
NameCK739865
Unique NameCK739865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length424
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1432 contig Csv1_Contig1432:1..423. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739865 vs. ExPASy Swiss-Prot
Match: CML29_ORYSJ (Probable calcium-binding protein CML29 OS=Oryza sativa subsp. japonica GN=CML29 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.171e-17
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   34 ESRPLSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSLGNLLKAAF*ISES 333
            +++ LS + E L+++ SLVE F+AFDSDNDG +T  EL G+  S+G    E +VR+M+ + D + DG LS+EE L+ MN   + LG+LG LL++A    ES
Sbjct:   15 QAQQLSVDFEALSYISSLVEAFQAFDSDNDGLVTAPELRGLLASLGLDKPEHEVRDMLARADADRDGKLSVEELLDVMNAGQLGLGALGALLQSAVPALES 115          
BLAST of CK739865 vs. ExPASy Swiss-Prot
Match: CML25_ARATH (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.372e-13
Identity = 32/96 (33.33%), Postives = 51/96 (53.12%), Query Frame = 1
Query:   31 AESRPLSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAF 318
            A+S  L +       +  L   F+ FD + DG I+  EL  I  S+G+   EE++ + + + D   DG ++ EEF+E+NTK M+   +   LK AF
Sbjct:   20 ADSPYLQKARSGKTEIRELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVELNTKGMDQNDVLENLKDAF 115          

HSP 2 Score: 31.9574 bits (71), Expect = 4.372e-13
Identity = 12/39 (30.77%), Postives = 25/39 (64.10%), Query Frame = 2
Query:  308 RQPFESLNLDGDDILTGAELHEVIENLGVGLSLPDCQEI 424
            +  F   ++DG+  ++  ELHEV+ +LG   S+ +C+++
Sbjct:  112 KDAFSVYDIDGNGSISAEELHEVLRSLGDECSIAECRKM 150          
BLAST of CK739865 vs. ExPASy Swiss-Prot
Match: POLC2_JUNOX (Polcalcin Jun o 2 OS=Juniperus oxycedrus PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.467e-11
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   76 VLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLK 309
            V  L E F+ FD++ DG I+G+EL+ I  S+G    E +V+ MM + D + DG +SL+EF+++N K   +  L N  K
Sbjct:   24 VHELEEVFKKFDANGDGKISGSELADILRSLGSDVGEAEVKAMMEEADADGDGYVSLQEFVDLNNKGASVKDLKNAFK 101          
BLAST of CK739865 vs. ExPASy Swiss-Prot
Match: CML15_ORYSJ (Probable calcium-binding protein CML15 OS=Oryza sativa subsp. japonica GN=CML15 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.806e-11
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   31 AESRPLSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEF 255
            A+ RP + E ET          FR FD++ DG I+ AEL+ +F SVG+  ++++V  MM++ D++ DG +SL EF
Sbjct:   45 AKPRPPAAEDET-------ERVFRKFDANGDGRISRAELAALFRSVGHAVTDDEVARMMQEADSDGDGYISLGEF 112          

HSP 2 Score: 27.7202 bits (60), Expect = 4.806e-11
Identity = 11/39 (28.21%), Postives = 21/39 (53.85%), Query Frame = 2
Query:  308 RQPFESLNLDGDDILTGAELHEVIENLGVGLSLPDCQEI 424
            R  F   + DG+ ++T AEL  V+  +G   ++  C+ +
Sbjct:  131 RHAFGVFDADGNGVITPAELARVLRGIGEAATVAQCRRM 169          
The following BLAST results are available for this feature:
BLAST of CK739865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CML29_ORYSJ4.171e-1745.54Probable calcium-binding protein CML29 OS=Oryza sa... [more]
CML25_ARATH4.372e-1333.33Probable calcium-binding protein CML25 OS=Arabidop... [more]
POLC2_JUNOX4.467e-1139.74Polcalcin Jun o 2 OS=Juniperus oxycedrus PE=1 SV=2[more]
CML15_ORYSJ4.806e-1140.00Probable calcium-binding protein CML15 OS=Oryza sa... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6256 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739865 ID=CK739865; Name=CK739865; organism=Citrus sinensis; type=EST; length=424bp
AGTTGTTGTAATTGCAGAAGTTGATCCATGGCTGAATCCAGGCCTCTCTC
CGAGGAAACCGAGACATTGAACCATGTCTTAAGTCTAGTGGAGACTTTCA
GAGCCTTTGATTCGGACAACGATGGGTCGATCACTGGTGCTGAGCTCTCT
GGAATATTCAATTCAGTTGGTTACAGGGCTAGCGAGGAAGATGTCAGGGA
AATGATGCGGCAAGGTGACACGAACAACGACGGATTGCTGAGCTTGGAGG
AGTTCTTGGAGATGAACACCAAAGACATGGAGCTTGGAAGCCTTGGGAAT
TTGCTCAAGGCAGCCTTTTGAATCTCTGAATCTTGATGGTGATGATATCT
TAACTGGAGCAGAGCTGCATGAAGTTATTGAAAATTTAGGAGTTGGGTTG
TCATTACCTGATTGCCAGGAGATT
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