CK739869

Overview
NameCK739869
Unique NameCK739869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length454
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:388..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 1.839e-67
Identity = 119/146 (81.51%), Postives = 131/146 (89.73%), Query Frame = 3 
Query:    3 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDFGGQASPRWSI*PTGISK 440
            RIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+GGAEYYRITNGLDF  +  P     P G++K
Sbjct:   68 RIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAK 213
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.014e-29
Identity = 54/123 (43.90%), Postives = 73/123 (59.35%), Query Frame = 3 
Query:   21 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG 380
            G    ++ PEYLTGE PGDYG+D  GLS  P  F++Y+  ELIHARWA+LGA G + PE  +++      E VWFK GA +     LNY G    I   +++  +  ++VL+G AE YR   G
Sbjct:   43 GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGG 165

HSP 2 Score: 40.0466 bits (92), Expect = 2.014e-29
Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D L+PGGPFDPLGLA DPD
Sbjct:  174 DTLYPGGPFDPLGLADDPD 192
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.471e-26
Identity = 54/117 (46.15%), Postives = 72/117 (61.54%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G
Sbjct:   67 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 182

HSP 2 Score: 35.4242 bits (80), Expect = 1.471e-26
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D L+PGG FDPLGLA DP+
Sbjct:  189 DPLYPGGSFDPLGLADDPE 207
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.471e-26
Identity = 54/117 (46.15%), Postives = 72/117 (61.54%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G
Sbjct:   68 ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 183

HSP 2 Score: 35.4242 bits (80), Expect = 1.471e-26
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D L+PGG FDPLGLA DP+
Sbjct:  190 DPLYPGGSFDPLGLADDPE 208
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.472e-26
Identity = 54/117 (46.15%), Postives = 71/117 (60.68%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G
Sbjct:   65 EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 180

HSP 2 Score: 35.4242 bits (80), Expect = 1.472e-26
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D L+PGG FDPLGLA DP+
Sbjct:  187 DPLYPGGSFDPLGLADDPE 205
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.472e-26
Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            +IP YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G
Sbjct:   64 QIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGG 179

HSP 2 Score: 36.1946 bits (82), Expect = 1.472e-26
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D ++PGG FDPLGLA DPD
Sbjct:  186 DPIYPGGAFDPLGLADDPD 204
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.472e-26
Identity = 56/120 (46.67%), Postives = 74/120 (61.67%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNG 380
            + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE  +K G   G EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G
Sbjct:   62 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWAVQVVLMGFVEGYRVGGG 177

HSP 2 Score: 38.1206 bits (87), Expect = 1.472e-26
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            DK++PGG FDPLGLA DPD
Sbjct:  184 DKVYPGGAFDPLGLADDPD 202
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.472e-26
Identity = 56/120 (46.67%), Postives = 74/120 (61.67%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNG 380
            + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE  +K G   G EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G
Sbjct:   62 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWAVQVVLMGFVEGYRVGGG 177

HSP 2 Score: 38.1206 bits (87), Expect = 1.472e-26
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            DK++PGG FDPLGLA DPD
Sbjct:  184 DKVYPGGAFDPLGLADDPD 202
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.918e-26
Identity = 56/123 (45.53%), Postives = 70/123 (56.91%), Query Frame = 3 
Query:   21 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG 380
            G    +  P YLTGE PGDYG+D  GLS  P+ F +Y+  ELIHARWAMLGA G   PE   K G   G EAVWFK GA +     L+Y G    +   N+V     +++L+G  E YR+  G
Sbjct:   46 GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGG 167

HSP 2 Score: 33.8834 bits (76), Expect = 1.918e-26
Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D L+PG  FDPLGLA DPD
Sbjct:  174 DPLYPGESFDPLGLADDPD 192
[Close]
BLAST of CK739869 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.494e-26
Identity = 54/117 (46.15%), Postives = 70/117 (59.83%), Query Frame = 3 
Query:   39 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 380
            E P YLTGE P DYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK GA +     L+Y G    +    + A+ A ++VL+G  E YR+  G
Sbjct:   66 EAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 181

HSP 2 Score: 36.1946 bits (82), Expect = 2.494e-26
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 1 
Query:  394 DKLHPGGPFDPLGLAKDPD 450
            D L+PGG FDPLGLA+DP+
Sbjct:  188 DPLYPGGSFDPLGLAEDPE 206
The following BLAST results are available for this feature:
BLAST of CK739869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB26_ARATH1.839e-6781.51Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE2.014e-2943.90Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB28_PEA1.471e-2646.15Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA1.471e-2646.15Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB24_PETSP1.472e-2646.15Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB21_GOSHI1.472e-2647.01Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_ORYSJ1.472e-2646.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.472e-2646.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLRE1.918e-2645.53Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_PETSP2.494e-2646.15Chlorophyll a-b binding protein 22R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6260 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739869 ID=CK739869; Name=CK739869; organism=Citrus sinensis; type=EST; length=454bp
GAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAG
TACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCT
CAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTC
ATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCC
TTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGAC
TGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAACA
TCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGT
GGTGCTGAATATTATAGAATCACCAACGGTTTGGATTTTGGAGGACAAGC
TTCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAGGATCCTGAC
CAAT
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