CK739871

Overview
NameCK739871
Unique NameCK739871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length325
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:972..1293. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.192e-26
Identity = 60/108 (55.56%), Postives = 72/108 (66.67%), Query Frame = 2
Query:   14 AALKLVSALVLCMLVTGPLSAQAITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLK----QARQINPLASTLIMPAGLPGACGVSIPYK 325
            A  KL   + LCM V+    A AITCGQV  SLAPCIG++RSGG +P  CCNG+R++N  ARTT DRQTACNCLK        +NP  +     AGLPG CGV++PYK
Sbjct:    5 AVTKLALVVALCMAVS---VAHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNA-----AGLPGKCGVNVPYK 104          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.739e-26
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = 2
Query:   14 AALKLVSALVLCMLVTGPLSAQAITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQARQ----INPLASTLIMPAGLPGACGVSIPYK 325
            A  KL   + LCM+V+ P+ AQAITCGQV  +LAPCI ++R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ       +NP  +     A LPG CGV+IPY+
Sbjct:    5 AMTKLALVVALCMVVSVPI-AQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNA-----AALPGKCGVNIPYQ 106          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.377e-26
Identity = 56/104 (53.85%), Postives = 71/104 (68.27%), Query Frame = 2
Query:   14 AALKLVSALVLCMLVTGPLSAQAITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQARQINPLASTLIMPAGLPGACGVSIPYK 325
            A  KL   + LCM+V+ P+ AQA+TCGQV  +LAPCI ++R GG +P  CCNG+R++N  A+TT DRQTACNCLKQ     P        A LPG CGV++PYK
Sbjct:    5 AMTKLALVVALCMVVSVPI-AQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVP-GVNANNAAALPGKCGVNVPYK 106          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.399e-25
Identity = 59/107 (55.14%), Postives = 72/107 (67.29%), Query Frame = 2
Query:   11 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQARQINPLASTLIMPAGLPGACGVSIPYK 325
            MA L  +S LVL CM+V GP++  A ++CG V G+LA CIG+L   GP+P  CC+GV SLN  ARTTPDRQ AC CL  A    P  + +   AGLP ACGV+IPYK
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTIN-VARAAGLPKACGVNIPYK 106          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.571e-24
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 2
Query:   14 AALKLVSALVLCMLVTGPLSAQAITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQARQINPLASTLIMPAGLPGACGVSIPY 322
            A +KL  A++LC++V  P +   ITCG V   LAPCIG+L+ GGP+   CC G+++LNAAA TTPDR+TACNCLK A             AGLPG CGV IPY
Sbjct:    5 AVIKLACAVLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLK-GGPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIK-GINYGKAAGLPGMCGVHIPY 105          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.679e-24
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   83 ITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQA-RQINPLASTLIMPAGLPGACGVSIPYK 325
            ITCGQV  SLAPCI +LR+GG +P  CCNGVRSLN AA+TT DRQ ACNCLK A   I  L   L + AGLPG CGVS+PYK
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGL--NLNLAAGLPGKCGVSVPYK 80          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.499e-24
Identity = 57/107 (53.27%), Postives = 71/107 (66.36%), Query Frame = 2
Query:   11 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQARQINPLASTLIMPAGLPGACGVSIPYK 325
            MA L  ++ LVL CM+V GP+++ A ++CG V G +APCIG+L   GP+P  CC GV +LN  ARTTPDRQ AC CL  A    P  +     AGLP ACGV+IPYK
Sbjct:    1 MAGLMKLACLVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNA-ARAAGLPKACGVNIPYK 106          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.499e-24
Identity = 58/107 (54.21%), Postives = 70/107 (65.42%), Query Frame = 2
Query:   11 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQARQINPLASTLIMPAGLPGACGVSIPYK 325
            MA L  +S LVL CM+V GP++  A ++CG V G+LA CIG+L   GP+P  CC GV +LN  ARTTPDRQ AC CL  A    P  +     AGLP ACGV+IPYK
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNA-ARAAGLPKACGVNIPYK 106          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.570e-24
Identity = 58/107 (54.21%), Postives = 70/107 (65.42%), Query Frame = 2
Query:   11 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQARQINPLASTLIMPAGLPGACGVSIPYK 325
            MA L  +S LVL CM+V GP++  A ++CG V G+LA CIG+L   GP+P  CC GV +LN  ARTTPDRQ AC CL  A    P  +     AGLP ACGV+IPYK
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNA-ARAAGLPKACGVNIPYK 106          
BLAST of CK739871 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.796e-24
Identity = 50/103 (48.54%), Postives = 71/103 (68.93%), Query Frame = 2
Query:   20 LKLVSALVLCMLVTGPLSAQA-ITCGQVRGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQARQINPLASTLIMPAGLPGACGVSIPYK 325
            +KL   L+ CM+V GP+++ A ++CG V  +LA CIG++  GG IP  CC+GV++LN+ A+TTPDRQ ACNC++ A +           AG+P ACGV+IPYK
Sbjct:    5 MKLACLLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYK 107          
The following BLAST results are available for this feature:
BLAST of CK739871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
NLTP_MALDO2.192e-2655.56Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUDU3.739e-2654.63Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV6.377e-2653.85Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP3_BRANA5.399e-2555.14Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP_SPIOL1.571e-2453.40Non-specific lipid-transfer protein OS=Spinacia ol... [more]
LTP1_MORNI2.679e-2467.07Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP2_BRANA3.499e-2453.27Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP1_BRANA3.499e-2454.21Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTPB_BRAOT4.570e-2454.21Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP1_ARATH7.796e-2448.54Non-specific lipid-transfer protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6263 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739871 ID=CK739871; Name=CK739871; organism=Citrus sinensis; type=EST; length=325bp
GAAATCTCAAATGGCTGCCCTCAAGCTTGTTTCAGCTTTGGTTCTGTGCA
TGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAGGTG
AGAGGCTCATTGGCACCATGCATCGGTTTCTTGAGATCGGGCGGCCCTAT
ACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCAGAA
CCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCCGCCAG
ATCAATCCCCTAGCCTCAACCTTAATAATGCCTGCTGGTCTTCCAGGAGC
TTGTGGAGTCAGCATTCCTTACAAG
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