CK739872

Overview
NameCK739872
Unique NameCK739872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7410 contig Csv1_Contig7410:595..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.040e-75
Identity = 128/164 (78.05%), Postives = 144/164 (87.80%), Query Frame = 3 
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            WPKM+ YERSR++LR ADL+EK+ EELA+LETW+NGKPY QSL +E+PM  RL  YYAGWADKIHGLT+P DGNY + TLHEPIGVAGQI+PWNFPLL+F WKV PAL CGNTIVLK+AEQTPLTA Y  KLF EAGLPPGVLN+VSG+G TAGAALASHMDVD
Sbjct:  113 WPKMSAYERSRVLLRFADLVEKHSEELASLETWDNGKPYQQSLTAEIPMFARLFRYYAGWADKIHGLTIPADGNYQVHTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTAFYAGKLFLEAGLPPGVLNIVSGFGATAGAALASHMDVD 276
[Close]
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 2.396e-72
Identity = 121/164 (73.78%), Postives = 145/164 (88.41%), Query Frame = 3 
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            WPKMT YERS+I+ R ADLIEK+ +E+AALETW+NGKPY QS + EVPM+ R+  YYAGWADKIHG+T+PGDG +H+QTLHEPIGVAGQI+PWNFPLL+ +WK+ PAL CGNT+VLK+AEQTPL+AL V KL HEAGLP GV+N+VSG+G TAGAA+ASHMDVD
Sbjct:  109 WPKMTAYERSKILFRFADLIEKHNDEIAALETWDNGKPYEQSAQIEVPMLARVFRYYAGWADKIHGMTMPGDGPHHVQTLHEPIGVAGQIIPWNFPLLMLSWKLGPALACGNTVVLKTAEQTPLSALLVGKLLHEAGLPDGVVNIVSGFGATAGAAIASHMDVD 272
[Close]
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 9.775e-58
Identity = 97/164 (59.15%), Postives = 129/164 (78.66%), Query Frame = 3 
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W +M   ER R++ + ADL+E++   LA +E+ N GKP++Q+   ++  V++ L YYAGWADKIHG+T+P DG+Y   T HEPIGV GQI+PWNFPLL+FTWK+APAL CGNT+V+K AEQTPL+ALY+  L  EAG PPGV+N++ GYGPTAGAA+ASH+ +D
Sbjct:   94 WRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIASHIGID 257
[Close]
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 9.775e-58
Identity = 97/164 (59.15%), Postives = 129/164 (78.66%), Query Frame = 3 
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W +M   ER R++ + ADL+E++   LA +E+ N GKP++Q+   ++  V++ L YYAGWADKIHG+T+P DG+Y   T HEPIGV GQI+PWNFPLL+FTWK+APAL CGNT+V+K AEQTPL+ALY+  L  EAG PPGV+N++ GYGPTAGAA+ASH+ +D
Sbjct:   94 WRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIASHIGID 257
[Close]
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 8.275e-57
Identity = 102/164 (62.20%), Postives = 125/164 (76.22%), Query Frame = 3 
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W +M   ER R++ R ADLIE++   LAALET +NGKPY+ S   ++ MV++ L YYAGWADK HG T+P DG+Y   T HEP+GV GQI+PWNFPLL+  WK+ PAL  GN +V+K AEQTPLTALYVA L  EAG PPGV+NV+ G+GPTAGAA+ASH DVD
Sbjct:   96 WRRMDASERGRLLNRLADLIERDRTYLAALETLDNGKPYIISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNVIPGFGPTAGAAIASHEDVD 259
[Close]
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 1.081e-56
Identity = 95/164 (57.93%), Postives = 127/164 (77.44%), Query Frame = 3 
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W +M   ER R++ + ADL+E++   LA +E+ N GKP++Q+   ++  V++   YYAGWADKIHG+T+P DG+Y   T HEPIGV GQI+PWNFPLL+F WK+APAL CGNT+V+K AEQTPL+ALY+  L  EAG PPGV+N++ GYGPTAGAA+ASH+ +D
Sbjct:   94 WRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVIKTFRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVINILPGYGPTAGAAIASHIGID 257
[Close]
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: ALDH2_RAT (Aldehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 2.408e-56
Identity = 101/164 (61.59%), Postives = 125/164 (76.22%), Query Frame = 3 
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W +M   +R R++ R ADLIE++   LAALET +NGKPYV S   ++ MV++ L YYAGWADK HG T+P DG++   T HEP+GV GQI+PWNFPLL+  WK+ PAL  GN +V+K AEQTPLTALYVA L  EAG PPGV+N+V G+GPTAGAA+ASH DVD
Sbjct:   95 WRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVD 258
[Close]
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: ALDH2_PIG (Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 4.107e-56
Identity = 101/164 (61.59%), Postives = 125/164 (76.22%), Query Frame = 3 
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W ++   +R R++ R ADLIE++   LAALET +NGKPYV S   ++ MV++ L YYAGWADK HG T+P DG+Y   T HEP+GV GQI+PWNFPLL+  WK+ PAL  GN +V+K +EQTPLTALYVA L  EAG PPGV+N+V GYGPTAGAA+ASH DVD
Sbjct:   97 WRRLDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTLPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVSEQTPLTALYVANLIKEAGFPPGVVNIVPGYGPTAGAAIASHEDVD 260
[Close]
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: ALDH2_MESAU (Aldehyde dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 4.107e-56
Identity = 101/164 (61.59%), Postives = 125/164 (76.22%), Query Frame = 3 
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W +M   +R R++ R ADLIE++   LAALET +NGKPYV S   ++ MV++ L YYAGWADK HG T+P DG++   T HEP+GV GQI+PWNFPLL+  WK+ PAL  GN +V+K AEQTPLTALYVA L  EAG PPGV+N+V G+GPTAGAA+ASH DVD
Sbjct:   76 WRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVD 239
[Close]
BLAST of CK739872 vs. ExPASy Swiss-Prot
Match: ALDH2_PONAB (Aldehyde dehydrogenase, mitochondrial OS=Pongo abelii GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 7.005e-56
Identity = 101/164 (61.59%), Postives = 124/164 (75.61%), Query Frame = 3 
Query:    3 WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVD 494
            W +M    R R++ R ADLIE++   LAALET +NGKPYV S   ++ MV++ L YYAGWADK HG T+P DG++   T HEP+GV GQI+PWNFPLL+  WK+ PAL  GN +V+K AEQTPLTALYVA L  EAG PPGV+N+V G+GPTAGAA+ASH DVD
Sbjct:   93 WRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVD 256
The following BLAST results are available for this feature:
BLAST of CK739872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AL2B4_ARATH1.040e-7578.05Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
AL2B7_ARATH2.396e-7273.78Aldehyde dehydrogenase family 2 member B7, mitocho... [more]
AL1A2_RAT9.775e-5859.15Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE9.775e-5859.15Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
ALDH2_BOVIN8.275e-5762.20Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
AL1A2_HUMAN1.081e-5657.93Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
ALDH2_RAT2.408e-5661.59Aldehyde dehydrogenase, mitochondrial OS=Rattus no... [more]
ALDH2_PIG4.107e-5661.59Aldehyde dehydrogenase, mitochondrial OS=Sus scrof... [more]
ALDH2_MESAU4.107e-5661.59Aldehyde dehydrogenase, mitochondrial OS=Mesocrice... [more]
ALDH2_PONAB7.005e-5661.59Aldehyde dehydrogenase, mitochondrial OS=Pongo abe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6264 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739872 ID=CK739872; Name=CK739872; organism=Citrus sinensis; type=EST; length=495bp
CTTGGCCAAAGATGACCCCTTATGAGAGGTCAAGGATTATGTTGCGGGCT
GCTGACTTGATTGAGAAAAACATGGAGGAGCTGGCAGCTTTGGAGACATG
GAACAATGGAAAGCCCTATGTACAATCTCTCAAATCTGAAGTACCAATGG
TGGTTCGCCTGTTGCACTATTATGCTGGATGGGCTGATAAAATCCACGGA
CTAACTGTCCCTGGTGATGGAAATTACCATATTCAAACTTTACATGAACC
AATTGGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGT
TTACTTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTA
AAGTCTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATT
CCATGAGGCTGGTCTTCCCCCTGGTGTTTTGAATGTAGTCTCTGGTTATG
GGCCAACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACA
back to top