CK739874 | Citrus Genome Database

Overview


Name	CK739874
Unique Name	CK739874
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	316

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK739874_ssr296	microsatellite	CK739874_ssr296:296..311.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10454	contig	Csv1_Contig10454:625..937.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK739874 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.273e-18
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1

Query:    1 KGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTS 108
            KGSRTGWQ MSRNWGQNWQSN+YLNGQSLSF+VTTS
Sbjct:  188 KGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTS 223

HSP 2 Score: 36.965 bits (84), Expect = 1.273e-18
Identity = 15/23 (65.22%), Postives = 19/23 (82.61%), Query Frame = 3

Query:  123 VTSYNVAPAGWSFGRTYSGAQFR 191
            + S NVA AGWSFG+T++GAQ R
Sbjct:  228 IVSNNVANAGWSFGQTFTGAQLR 250

[Close]

BLAST of CK739874 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.153e-18
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1

Query:    1 KGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTS 108
            KGSRT WQ MSRNWGQNWQSN+YLNGQ+LSF+VTTS
Sbjct:  187 KGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTS 222

HSP 2 Score: 40.817 bits (94), Expect = 2.153e-18
Identity = 15/23 (65.22%), Postives = 20/23 (86.96%), Query Frame = 3

Query:  123 VTSYNVAPAGWSFGRTYSGAQFR 191
            V S+N APAGWS+G+T++G QFR
Sbjct:  227 VVSFNAAPAGWSYGQTFAGGQFR 249

[Close]

BLAST of CK739874 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.731e-18
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1

Query:    1 KGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTS 108
            KGSRT WQ MSRNWGQNWQSN+YLNGQSLSF VTTS
Sbjct:  192 KGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTS 227

HSP 2 Score: 40.0466 bits (92), Expect = 4.731e-18
Identity = 16/23 (69.57%), Postives = 19/23 (82.61%), Query Frame = 3

Query:  123 VTSYNVAPAGWSFGRTYSGAQFR 191
            V S+NVAP  WSFG+TY+G QFR
Sbjct:  232 VVSFNVAPPTWSFGQTYTGGQFR 254

[Close]

BLAST of CK739874 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.353e-17
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1

Query:    1 KGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTS 108
            KGS TGWQPMSRNWGQNWQSN+YL+GQSLSF+V  S
Sbjct:  190 KGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVS 225

HSP 2 Score: 38.1206 bits (87), Expect = 1.353e-17
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  123 VTSYNVAPAGWSFGRTYSGAQF 188
            VTS NV PAGW FG+T+ G QF
Sbjct:  230 VTSNNVVPAGWQFGQTFEGGQF 251

[Close]

BLAST of CK739874 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.868e-17
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1

Query:    1 KGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTS 108
            KGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT S
Sbjct:  185 KGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTAS 220

HSP 2 Score: 34.2686 bits (77), Expect = 3.868e-17
Identity = 14/22 (63.64%), Postives = 16/22 (72.73%), Query Frame = 3

Query:  123 VTSYNVAPAGWSFGRTYSGAQF 188
            VTS NVA  GW FG+T+ G QF
Sbjct:  225 VTSNNVAHPGWQFGQTFEGGQF 246

[Close]

BLAST of CK739874 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.868e-17
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1

Query:    1 KGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTS 108
            KGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT S
Sbjct:  185 KGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTAS 220

HSP 2 Score: 34.2686 bits (77), Expect = 3.868e-17
Identity = 14/22 (63.64%), Postives = 16/22 (72.73%), Query Frame = 3

Query:  123 VTSYNVAPAGWSFGRTYSGAQF 188
            VTS NVA  GW FG+T+ G QF
Sbjct:  225 VTSNNVAHPGWQFGQTFEGGQF 246

[Close]

BLAST of CK739874 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 3.152e-16
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1

Query:    1 KGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTS 108
            KGSRT WQ MSRNWGQNWQSN  LNGQ+LSF+VT S
Sbjct:  191 KGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTAS 226

HSP 2 Score: 38.5058 bits (88), Expect = 3.152e-16
Identity = 15/23 (65.22%), Postives = 19/23 (82.61%), Query Frame = 3

Query:  123 VTSYNVAPAGWSFGRTYSGAQFR 191
            V S N+APA WSFG+T++G QFR
Sbjct:  231 VVSNNIAPASWSFGQTFTGRQFR 253

[Close]

BLAST of CK739874 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 7.311e-15
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1

Query:    1 KGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTS 108
            KG+ TGW PMSRNWGQNWQSN+ L GQ+LSF VT S
Sbjct:  201 KGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGS 236

HSP 2 Score: 37.3502 bits (85), Expect = 7.311e-15
Identity = 14/22 (63.64%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  126 TSYNVAPAGWSFGRTYSGAQFR 191
            TS+N APAGW FG+T+ G  FR
Sbjct:  242 TSWNAAPAGWHFGQTFEGKNFR 263

[Close]

BLAST of CK739874 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.605e-14
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1

Query:    1 KGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTS 108
            KGSRTGW  MSRNWG NWQSN YL+GQSLSF+VT+S
Sbjct:  198 KGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSS 233

HSP 2 Score: 31.5722 bits (70), Expect = 1.605e-14
Identity = 12/21 (57.14%), Postives = 18/21 (85.71%), Query Frame = 3

Query:  123 VTSYNVAPAGWSFGRTYSGAQ 185
            +T  +VAPAGW+FG+T+S +Q
Sbjct:  238 LTFLDVAPAGWTFGQTFSTSQ 258

[Close]

BLAST of CK739874 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.523e-14
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1

Query:    1 KGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTS 108
            KG+ T WQ MSRNWGQNWQSN  L+GQ+LSF+VTTS
Sbjct:  190 KGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTS 225

HSP 2 Score: 35.039 bits (79), Expect = 3.523e-14
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = 3

Query:  123 VTSYNVAPAGWSFGRTYSGAQFR 191
            V S N  P  WSFG+TY+G QFR
Sbjct:  230 VISNNATPRNWSFGQTYTGKQFR 252

The following BLAST results are available for this feature:

BLAST of CK739874 vs. ExPASy Swiss-Prot

BLAST of CK739874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30


Match Name	E-value	Identity	Description
EXPA1_ARATH	1.273e-18	91.67	Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ...	[more]
EXP10_ARATH	2.153e-18	86.11	Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=...	[more]
EXPA5_ARATH	4.731e-18	88.89	Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ...	[more]
EXPA2_ORYSJ	1.353e-17	83.33	Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP...	[more]
EXPA4_ORYSJ	3.868e-17	86.11	Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP...	[more]
EXPA4_ORYSI	3.868e-17	86.11	Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4...	[more]
EXP15_ARATH	3.152e-16	80.56	Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=...	[more]
EXPA7_ORYSJ	7.311e-15	75.00	Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP...	[more]
EXPA1_ORYSJ	1.605e-14	80.56	Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP...	[more]
EXP14_ARATH	3.523e-14	75.00	Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_6266 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61C07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739874 ID=CK739874; Name=CK739874; organism=Citrus sinensis; type=EST; length=316bp
AAAGGATCTAGAACTGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAAAA
CTGGCAAAGCAACACTTATCTCAATGGCCAAAGCCTGTCATTTGAGGTCA
CCACAAGCCGATGGCCGTACCTGTGACTTCCTACAATGTTGCCCCTGCTG
GCTGGTCCTTTGGCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCAC
CAAGACCATTAGAGATTGGGTTTTAACACCTTTTTTAGCTATATATTCGT
GTACTAAGTAGTATATTTTAGTATGAAATTTTAGCATACTAGGGGATATA
TATATATATATAATAT