CK739875

Overview
NameCK739875
Unique NameCK739875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length332
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2369 contig Csv1_Contig2369:97..428. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739875 vs. ExPASy Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.780e-20
Identity = 44/62 (70.97%), Postives = 55/62 (88.71%), Query Frame = 3
Query:   57 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 242
            M++ ELAC YA LIL DDGIAIT +KIA +VKAAN+ +ESYWP+LFAKLLEKRN++DLI++V
Sbjct:    1 MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLILSV 62          
BLAST of CK739875 vs. ExPASy Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.740e-19
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 3
Query:   60 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 242
            +  ELAC+YA +IL D+GIAIT DKIA LVKAA VSIESYWP LFAK+ EKRN+ DLIMNV
Sbjct:    3 TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNV 63          
BLAST of CK739875 vs. ExPASy Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.279e-18
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 3
Query:   60 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 242
            +  ELAC+YA +IL D+GIAIT DKIA LVKAA V+IESYWP LFAK+ EKRN+ DLIMNV
Sbjct:    3 TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNV 63          
BLAST of CK739875 vs. ExPASy Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.279e-18
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 3
Query:   60 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 242
            +  ELAC+YA +IL D+GIAIT+DKIA LVKAA V IESYWP LFAK+ EKRN+ DLIMNV
Sbjct:    3 TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNV 63          
BLAST of CK739875 vs. ExPASy Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.288e-18
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   57 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 242
            MS SELACTYA LILHDDG+ IT D I  + KAA V +E YWP+LFAKL  K+++DDLI NV
Sbjct:    1 MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLITNV 62          
BLAST of CK739875 vs. ExPASy Swiss-Prot
Match: RLA1_MOUSE (60S acidic ribosomal protein P1 OS=Mus musculus GN=Rplp1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.256e-14
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 3
Query:   60 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 242
            S SELAC Y+ LILHDD + +T DKI  L+KAA VS+E +WP LFAK L   N+  LI NV
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVSVEPFWPGLFAKALANVNIGSLICNV 63          
BLAST of CK739875 vs. ExPASy Swiss-Prot
Match: RLA1_RAT (60S acidic ribosomal protein P1 OS=Rattus norvegicus GN=Rplp1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.483e-14
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 3
Query:   60 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 242
            S SELAC Y+ LILHDD + +T DKI  L+KAA V++E +WP LFAK L   N+  LI NV
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNV 63          
BLAST of CK739875 vs. ExPASy Swiss-Prot
Match: RLA1_HUMAN (60S acidic ribosomal protein P1 OS=Homo sapiens GN=RPLP1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.483e-14
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 3
Query:   60 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 242
            S SELAC Y+ LILHDD + +T DKI  L+KAA V++E +WP LFAK L   N+  LI NV
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNV 63          
BLAST of CK739875 vs. ExPASy Swiss-Prot
Match: RLA1_BOVIN (60S acidic ribosomal protein P1 OS=Bos taurus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.483e-14
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 3
Query:   60 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 242
            S SELAC Y+ LILHDD + +T DKI  L+KAA V++E +WP LFAK L   N+  LI NV
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNV 63          
BLAST of CK739875 vs. ExPASy Swiss-Prot
Match: RLA1_DROME (60S acidic ribosomal protein P1 OS=Drosophila melanogaster GN=RpLP1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.617e-13
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 3
Query:   66 SELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 242
            +ELAC YA LIL DD +A+T +KI  ++KAANV +E YWP LFAK LE  N+ DLI N+
Sbjct:    5 AELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNI 63          
The following BLAST results are available for this feature:
BLAST of CK739875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RLA1_MAIZE6.780e-2070.9760S acidic ribosomal protein P1 OS=Zea mays GN=RPP... [more]
RLA11_ARATH5.740e-1973.7760S acidic ribosomal protein P1-1 OS=Arabidopsis t... [more]
RLA13_ARATH1.279e-1872.1360S acidic ribosomal protein P1-3 OS=Arabidopsis t... [more]
RLA12_ARATH1.279e-1872.1360S acidic ribosomal protein P1-2 OS=Arabidopsis t... [more]
RLA1_CHLRE8.288e-1866.1360S acidic ribosomal protein P1 OS=Chlamydomonas r... [more]
RLA1_MOUSE4.256e-1459.0260S acidic ribosomal protein P1 OS=Mus musculus GN... [more]
RLA1_RAT9.483e-1457.3860S acidic ribosomal protein P1 OS=Rattus norvegic... [more]
RLA1_HUMAN9.483e-1457.3860S acidic ribosomal protein P1 OS=Homo sapiens GN... [more]
RLA1_BOVIN9.483e-1457.3860S acidic ribosomal protein P1 OS=Bos taurus GN=R... [more]
RLA1_DROME1.617e-1359.3260S acidic ribosomal protein P1 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6267 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739875 ID=CK739875; Name=CK739875; organism=Citrus sinensis; type=EST; length=332bp
GCGCAGCAGAGTGCACGGCGCAATCCGCAGTAGGTCTGATCTCTTGAGTC
AAAGCAATGTCGGCTTCGGAGCTTGCTTGTACTTATGCCTGTTTGATCCT
CCACGATGACGGCATCGCCATTACTACGGATAAGATTGCACAACTGGTGA
AGGCTGCCAACGTGTCTATTGAATCTTACTGGCCTAGTTTGTTTGCTAAG
CTCTTAGAGAAGCGGAACTTAGATGATCTTATAATGAATGTGGGGTCTGG
TGGTGGCGGTGGTGCAATTGCTGTTGCAGCTCCTGCTGGAGGTGCTGGGG
CTGATGCTGCTGCTCCCCCACCGGAGGAGAAG
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