CK739881

Overview
NameCK739881
Unique NameCK739881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length292
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12573 contig Csv1_Contig12573:57..348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.513e-51
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 2
Query:   17 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.513e-51
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 2
Query:   17 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 1.513e-51
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 2
Query:   17 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.513e-51
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 2
Query:   17 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 1.513e-51
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 2
Query:   17 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.513e-51
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 2
Query:   17 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.513e-51
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 2
Query:   17 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSI (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 1.513e-51
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 2
Query:   17 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.513e-51
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 2
Query:   17 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM
Sbjct:    1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92          
BLAST of CK739881 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.854e-50
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 2
Query:   17 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 292
            MALP QQ VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM
Sbjct:    1 MALPGQQAVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92          
The following BLAST results are available for this feature:
BLAST of CK739881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RAN_VICFA1.513e-51100.00GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RANB1_TOBAC1.513e-51100.00GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]
RAN3_ARATH1.513e-51100.00GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_SOLLC1.513e-51100.00GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN2_ARATH1.513e-51100.00GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN1_SOLLC1.513e-51100.00GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]
RAN1_ORYSJ1.513e-51100.00GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN1_ORYSI1.513e-51100.00GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN1_ARATH1.513e-51100.00GTP-binding nuclear protein Ran-1 OS=Arabidopsis t... [more]
RANA1_TOBAC2.854e-5097.83GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6273 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739881 ID=CK739881; Name=CK739881; organism=Citrus sinensis; type=EST; length=292bp
CGCAACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATC
CAAGCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGACTACC
TTTGTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGAC
CATTGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAA
TACGATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGGCTT
AGAGATGGATACTACATCCATGGGCAATGTGCTATCATCATG
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