CK739882
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 1.967e-59 Identity = 113/117 (96.58%), Postives = 113/117 (96.58%), Query Frame = 3 Query: 3 CKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353 CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRRCEPKKFGGRGARARF Sbjct: 24 CKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRRCEPKKFGGRGARARF 140
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 5.356e-57 Identity = 104/117 (88.89%), Postives = 113/117 (96.58%), Query Frame = 3 Query: 3 CKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353 CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRFAGV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+ Sbjct: 25 CKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRY 141
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1) HSP 1 Score: 218.779 bits (556), Expect = 6.995e-57 Identity = 103/117 (88.03%), Postives = 113/117 (96.58%), Query Frame = 3 Query: 3 CKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353 CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRFAGV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+ Sbjct: 25 CKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRY 141
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 1.193e-56 Identity = 104/117 (88.89%), Postives = 114/117 (97.44%), Query Frame = 3 Query: 3 CKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353 CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRHRF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLVADPRRCEPKKFGGRGAR+RF Sbjct: 24 CKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRCEPKKFGGRGARSRF 140
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 4.534e-56 Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 3 Query: 18 GLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353 GLIKING PIELVEPEILRFKA+EPILLLG+ RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF Sbjct: 29 GLIKINGSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 140
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 6.128e-53 Identity = 100/117 (85.47%), Postives = 113/117 (96.58%), Query Frame = 3 Query: 3 CKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353 C+RGRGLI++ PIELVEPEILR+KA+EP+LLLGR +FAGVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADPRRCEPKKFGGRGAR+RF Sbjct: 22 CRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADPRRCEPKKFGGRGARSRF 137
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 8.004e-53 Identity = 98/117 (83.76%), Postives = 109/117 (93.16%), Query Frame = 3 Query: 3 CKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353 CKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRFAGVDMRIR GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRCE KKFGG GARARF Sbjct: 25 CKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARF 141
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 2.575e-51 Identity = 96/117 (82.05%), Postives = 105/117 (89.74%), Query Frame = 3 Query: 3 CKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353 CK GRGLIK+NG PIEL+ PE+LR KA+EPILL GR RF +DMRIRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI RYDRTLLVADPRRCEPKKFGGRGARARF Sbjct: 28 CKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARF 144
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 2.575e-51 Identity = 96/117 (82.05%), Postives = 105/117 (89.74%), Query Frame = 3 Query: 3 CKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353 CK GRGLIK+NG PIEL+ PE+LR KA+EPILL GR RF +DMRIRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI RYDRTLLVADPRRCEPKKFGGRGARARF Sbjct: 28 CKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARF 144
BLAST of CK739882 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2) HSP 1 Score: 194.126 bits (492), Expect = 1.845e-49 Identity = 90/117 (76.92%), Postives = 106/117 (90.60%), Query Frame = 3 Query: 3 CKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARF 353 CKRG GLIK+NG P+E++EP L++K EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+ Sbjct: 25 CKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARY 141 The following BLAST results are available for this feature:
BLAST of CK739882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739882 ID=CK739882; Name=CK739882; organism=Citrus sinensis; type=EST; length=354bpback to top |