CK739887

Overview
NameCK739887
Unique NameCK739887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1433 contig Csv1_Contig1433:1..404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739887 vs. ExPASy Swiss-Prot
Match: AX6B_SOYBN (Auxin-induced protein 6B OS=Glycine max PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.631e-21
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 2
Query:  167 MGFRLPGIVQAKKILRLSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMG 403
            MGFRLPGI       R +SF A+Q++  A +V KGYLAVYVGE +M+RF+IPVSYLN+  FQDLLSQAEEEFG+HHP G
Sbjct:    1 MGFRLPGI-------RKASFSANQASSKAVDVEKGYLAVYVGE-KMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNG 71          
BLAST of CK739887 vs. ExPASy Swiss-Prot
Match: AX10A_SOYBN (Auxin-induced protein X10A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.802e-20
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 2
Query:  167 MGFRLPGIVQAKKILRLSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMG 403
            MGFRLPGI       R +S  A+Q++  + EVPKGYL VYVG+ +M+RF+IPVSYLNQ  FQDLL+QAEEEFG+ HPMG
Sbjct:    1 MGFRLPGI-------RKTSIAANQASSKSVEVPKGYLVVYVGD-KMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMG 71          
BLAST of CK739887 vs. ExPASy Swiss-Prot
Match: AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.796e-19
Identity = 50/79 (63.29%), Postives = 56/79 (70.89%), Query Frame = 2
Query:  167 MGFRLPGIVQAKKILRLSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMG 403
            MGFRLPGI +A K               A + PKGYLAVYVGE ++KRF+IPVSYLNQ  FQDLLSQAEEEFG+ HPMG
Sbjct:    1 MGFRLPGIRKASK---------------AADAPKGYLAVYVGE-KLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMG 63          
BLAST of CK739887 vs. ExPASy Swiss-Prot
Match: A10A5_SOYBN (Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.570e-19
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 2
Query:  167 MGFRLPGIVQAKKILRLSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMG 403
            MGFR+ GIV      R +SF  +Q+A    +VPKGY AVYVG+ +M+RF IPVSYLN+  FQ+LLSQAEEEFG+ HPMG
Sbjct:    1 MGFRIAGIV------RRTSFYTTQAASKRVDVPKGYAAVYVGD-KMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMG 72          
BLAST of CK739887 vs. ExPASy Swiss-Prot
Match: ARG7_PHAAU (Indole-3-acetic acid-induced protein ARG7 OS=Phaseolus aureus GN=ARG7 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.887e-19
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 2
Query:  167 MGFRLPGIVQAKKILRLSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMG 403
            MGFRLPGI       R +    ++++    + PKGYLAVYVGEN MKRF+IPVS+LNQ  FQDLLSQAEEEFG+ HPMG
Sbjct:    1 MGFRLPGI-------RKTLSARNEASSKVLDAPKGYLAVYVGEN-MKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMG 71          
BLAST of CK739887 vs. ExPASy Swiss-Prot
Match: AXX15_SOYBN (Auxin-induced protein X15 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.203e-18
Identity = 48/79 (60.76%), Postives = 55/79 (69.62%), Query Frame = 2
Query:  167 MGFRLPGIVQAKKILRLSSFKASQSAMTATEVPKGYLAVYVGENEMKRFMIPVSYLNQSPFQDLLSQAEEEFGFHHPMG 403
            MGFRLPGI               + A  A + PKGYLAVYVGE +MKRF+IPVSY+NQ  FQDLL+QAEEEFG+ HPMG
Sbjct:    1 MGFRLPGI---------------RKASNAVDAPKGYLAVYVGE-KMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMG 63          
The following BLAST results are available for this feature:
BLAST of CK739887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AX6B_SOYBN3.631e-2165.82Auxin-induced protein 6B OS=Glycine max PE=2 SV=1[more]
AX10A_SOYBN1.802e-2063.29Auxin-induced protein X10A OS=Glycine max PE=2 SV=... [more]
AX15A_SOYBN5.796e-1963.29Auxin-induced protein 15A OS=Glycine max PE=2 SV=1[more]
A10A5_SOYBN7.570e-1960.76Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=... [more]
ARG7_PHAAU9.887e-1962.03Indole-3-acetic acid-induced protein ARG7 OS=Phase... [more]
AXX15_SOYBN2.203e-1860.76Auxin-induced protein X15 OS=Glycine max PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6279 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739887 ID=CK739887; Name=CK739887; organism=Citrus sinensis; type=EST; length=404bp
CACATATCAGAAGACTTCCTGCAGATCCCTTCATCTATATAAACCGTGTA
ATTGGGTTCACAACTCACAAGCATCCAAGTCTCTACTTAAAAATCTCAAG
CACTAAAATCCCTTTCATTTTTCAAGTTCTTAAATCCATTTTTTTTTCTC
GTTTTATCAAATCAACATGGGTTTCCGTTTGCCTGGTATTGTTCAAGCTA
AGAAAATTCTTCGACTGTCTTCATTTAAGGCTAGCCAATCAGCTATGACA
GCAACAGAAGTTCCCAAAGGCTACCTTGCAGTTTATGTGGGGGAAAATGA
GATGAAAAGATTCATGATTCCAGTATCATATTTGAACCAGTCTCCATTCC
AAGACTTGTTGAGTCAAGCTGAAGAAGAATTTGGATTTCATCATCCCATG
GGTG
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