CK739907

Overview
NameCK739907
Unique NameCK739907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1283 contig Csv1_Contig1283:265..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.447e-35
Identity = 75/119 (63.03%), Postives = 85/119 (71.43%), Query Frame = 2
Query:   14 SSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            S+S E S FA+ ++DWKET EAHVFKADLPGL          + RVLQISGER+VEKEDKND WHRVER  GKF+RRFRLPENAK+DQVKASMENGVL               SI+I+G
Sbjct:   36 SNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.469e-35
Identity = 74/120 (61.67%), Postives = 86/120 (71.67%), Query Frame = 2
Query:   11 GSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            G++S E S FA+ ++DWKET EAHVFKADLPGL          + RVLQISGER++EKEDKNDKW RVER  GKF+RRFRLPENAK+DQVKASMENGVL               SI+I+G
Sbjct:   35 GTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.500e-35
Identity = 76/119 (63.87%), Postives = 82/119 (68.91%), Query Frame = 2
Query:   14 SSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            S S E S F S +VDWKET EAHVFKAD+PGL          DGRVLQISGER+VEKEDKND WHRVER  GK VRRFRLPENAK+DQVKASMENGVL               +I I+G
Sbjct:   35 SLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.500e-35
Identity = 76/123 (61.79%), Postives = 84/123 (68.29%), Query Frame = 2
Query:    2 APLGSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            +P  S   E   F S +VDWKET EAHVFKADLPGL          D RVLQISGERSVEKEDKND+WHRVER  GKF+RRFRLPENAK+D+VKASMENGVL               SI+I+G
Sbjct:   36 SPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.090e-34
Identity = 74/122 (60.66%), Postives = 83/122 (68.03%), Query Frame = 2
Query:    5 PLGSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            P  S S E S F S +VDWKET EAHVFKAD+PGL          D RVLQISGER+VEKEDKND WHRVER  GKF RRFRLPENAK+++VKASMENGVL               +I+I+G
Sbjct:   33 PTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.730e-34
Identity = 72/119 (60.50%), Postives = 84/119 (70.59%), Query Frame = 2
Query:   14 SSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            ++S E S FA+ ++DWKET E HVFK DLPGL          + RVLQISGER+VEKEDKNDKWHR+ER  GKF+RRFRLPENAK+DQVKASMENGVL               SI+I+G
Sbjct:   36 TNSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.081e-34
Identity = 72/117 (61.54%), Postives = 82/117 (70.09%), Query Frame = 2
Query:   20 SNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            S E S F S +VDWKET EAHVFKAD+PGL          D +VLQISGER+VEKEDKND WHRVER  GKF+RRFRLPENAK++QVKASMENGVL               +I+I+G
Sbjct:   45 SRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 7.942e-34
Identity = 73/119 (61.34%), Postives = 82/119 (68.91%), Query Frame = 2
Query:   14 SSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            S   E S F S +VDWKET EAHVFKADLPG+          D RVLQISGERSVEKEDKND+WHR+ER  GKF+RRFRLPENAK+DQVKA+MENGVL               +I I+G
Sbjct:   40 SFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 7.942e-34
Identity = 70/98 (71.43%), Postives = 77/98 (78.57%), Query Frame = 2
Query:   14 SSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 307
            S   E S F S ++DWKET EAHVFKADLPGL          D RVLQISGER+VEKEDKND+WHRVER  GKF+RRFRLPENAK+DQVKA+MENGVL
Sbjct:   25 SFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVL 122          
BLAST of CK739907 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.037e-33
Identity = 73/122 (59.84%), Postives = 84/122 (68.85%), Query Frame = 2
Query:    5 PLGSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 370
            P G+SS E + FA A++DWKET EAHVFKAD+PGL          DG VLQISGERS E+E+K DKWHRVER  GKF+RRFRLPEN K +Q+KASMENGVL               SIQ+TG
Sbjct:   41 PRGTSS-ETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
The following BLAST results are available for this feature:
BLAST of CK739907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
HSP12_SOLPE1.447e-3563.0317.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOLPE2.469e-3561.6717.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOYBN5.500e-3563.8717.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA5.500e-3561.7918.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP14_SOYBN2.090e-3460.6617.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLLC2.730e-3460.5017.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP16_SOYBN6.081e-3461.5418.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA7.942e-3461.3418.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_MEDSA7.942e-3471.4318.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS181_ORYSJ1.037e-3359.8418.1 kDa class I heat shock protein OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6299 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739907 ID=CK739907; Name=CK739907; organism=Citrus sinensis; type=EST; length=458bp
GGCGCCCCTTGGCTCCTCCAGCAACGAGGTGTCAACATTCGCCAGTGCTC
AAGTCGATTGGAAAGAAACCCGGGAAGCTCATGTTTTCAAGGCGGATCTT
CCGGGGCTCAAGAAAGAGGAAGTGAAGGTTGAAGTTGAGGACGGGAGAGT
CCTTCAGATCAGCGGTGAGAGGAGCGTCGAGAAGGAAGACAAGAACGACA
AATGGCACCGTGTTGAGAGGGGCCGCGGCAAGTTCGTGAGGAGGTTCCGG
TTGCCTGAGAATGCCAAGATCGATCAAGTTAAGGCATCAATGGAGAATGG
TGTCCTCACCGTCACTGTTCCCAAAGTGGAGGAGAAGAAGCCTGAGGTCA
AATCCATTCAGATCACTGGTTGAAACTCTCCGTTAATTGCAGCCTTTTTA
ATTAGGTTCTTGTTTTGTTCTGTGTGTTAATGAACGATGTGCGATTGCTG
TTAAGTGT
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