CK739908

Overview
NameCK739908
Unique NameCK739908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length324
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7546 contig Csv1_Contig7546:11..334. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK739908 vs. ExPASy Swiss-Prot
Match: SEC22_ARATH (25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.628e-29
Identity = 61/67 (91.04%), Postives = 66/67 (98.51%), Query Frame = 2 
Query:  122 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIE 322
            MVKMT+IARVTDGLPLAEGLDDGRDL D++MYKQQVKALFKNLSRGQN+ASRMS+ETGPYVFHYIIE
Sbjct:    1 MVKMTLIARVTDGLPLAEGLDDGRDLPDSDMYKQQVKALFKNLSRGQNDASRMSVETGPYVFHYIIE 67
The following BLAST results are available for this feature:
BLAST of CK739908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SEC22_ARATH1.628e-2991.0425.3 kDa vesicle transport protein OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6300 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739908 ID=CK739908; Name=CK739908; organism=Citrus sinensis; type=EST; length=324bp
GCTCTTTTCTCTCTGTCGATCCTTGTCTTCTCTCTTCTTCAGATCGTTGA
ATTCGCGTAGAAAATCCCAAATGCAAAAAGGGTGATTTGGTGTAGCAGAG
GAATTTTAAAGTGAGGCAAAAATGGTGAAGATGACGATGATTGCCCGTGT
TACTGATGGTCTTCCATTGGCGGAGGGACTGGATGATGGTCGTGATTTGA
GAGATGCTGAGATGTACAAGCAACAAGTCAAGGCCTTGTTTAAGAATCTC
TCGAGAGGCCAGAATGAGGCTTCAAGGATGTCAATTGAGACAGGACCTTA
TGTTTTCCATTATATCATTGAAGG
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