CK739910

Overview
NameCK739910
Unique NameCK739910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1618 contig Csv1_Contig1618:90..532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739910 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.115e-21
Identity = 59/107 (55.14%), Postives = 73/107 (68.22%), Query Frame = 1
Query:  124 DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESEKTKAENKGQKKLSAVAAWENSKKASLEAQLKKIE 444
            DVAEEK   Q    E+  DDSKAL VV++  +                DRDV LA++ KEKR SF++AWEESEK+KAENK +KK++ V AWENSKKA++EAQLKKIE
Sbjct:   48 DVAEEKI--QNPPPEQIFDDSKALTVVEKPVEEPAPAKPASASL----DRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIE 148          
BLAST of CK739910 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.902e-21
Identity = 61/113 (53.98%), Postives = 74/113 (65.49%), Query Frame = 1
Query:  127 VAEEKAVTQ------LHDQEKPVDDSKALAVVD-QTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESEKTKAENKGQKKLSAVAAWENSKKASLEAQLKKIE 444
            VA+EKA+          ++EKP DDSKAL VV+ + P+                DRD  LA V  EKR S IKAWEESEK+KAENK QKK+SA+ AWENSKKA+LEA+LKK+E
Sbjct:   29 VADEKAIVAPALPPPAEEKEKP-DDSKALVVVETKAPEPADEKKEGSI------DRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKME 134          
BLAST of CK739910 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.437e-21
Identity = 58/107 (54.21%), Postives = 75/107 (70.09%), Query Frame = 1
Query:  124 DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDXXXXXXXXXXXXXXXHDRDVALAEVEKEKRESFIKAWEESEKTKAENKGQKKLSAVAAWENSKKASLEAQLKKIE 444
            +VA+EK    +H+   P  +SKALAVV++  +                DRDV LA++EKEK+ SFIKAWEESEK+KAEN+ QKK+S V AWENSKKA++EAQL+KIE
Sbjct:   30 EVADEK----IHNP--PPVESKALAVVEKPIEEHTPKKASSGSA----DRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIE 126          
The following BLAST results are available for this feature:
BLAST of CK739910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y3126_ARATH1.115e-2155.14Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_SOLTU1.902e-2153.98Remorin OS=Solanum tuberosum PE=1 SV=1[more]
REMO_ARATH9.437e-2154.21Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6302 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739910 ID=CK739910; Name=CK739910; organism=Citrus sinensis; type=EST; length=444bp
GCGAAGTCTCTGTAGACGATAATGGCAGAGGAGCAAGTGAAGAAAGTAGA
AGCTGAGACGCCAGCGGCCCCAGCTCCAGCTCCAGCTCTTGCTCCAGCTC
CGGCTCCGGCTGTCCCCAACAACGACGTCGCGGAGGAGAAAGCTGTTACT
CAATTACATGATCAAGAGAAGCCTGTTGATGACTCCAAAGCTCTCGCAGT
AGTTGATCAAACTCCAGATTCGGCCAAAAAGAAAATTTCTGGGGAAAAGA
AAATTTCTGGATCGCATGATAGAGATGTTGCTCTTGCAGAGGTCGAAAAG
GAAAAGAGAGAGTCTTTTATCAAGGCATGGGAAGAGAGTGAAAAAACAAA
AGCCGAGAATAAGGGTCAGAAAAAGCTCTCAGCTGTTGCTGCATGGGAAA
ATAGCAAGAAAGCATCTCTAGAAGCCCAACTGAAAAAGATTGAG
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