CK739911

Overview
NameCK739911
Unique NameCK739911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length218
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3765 contig Csv1_Contig3765:601..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739911 vs. ExPASy Swiss-Prot
Match: PLDD1_ARATH (Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.436e-22
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 3
Query:    3 TVVPRDDNVVRVSKEDDPENWHVQILRSIDSGSLKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSA 218
            +++P DD  V VSKEDDPENWHVQI RSIDSGS+KGFPK  ++ + Q L CAK +V+DKSIQTAYIQ IRSA
Sbjct:  508 SIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSA 579          
BLAST of CK739911 vs. ExPASy Swiss-Prot
Match: PLDB1_ARATH (Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.787e-15
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 3
Query:    9 VPRDDNVVRVSK--------------EDDPENWHVQILRSIDSGSLKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSA 218
            +P DD ++R+ +              E+DPE WHVQI RSIDS S+KGFPK  +D   ++L+C K+V+ID SI TAY++AIR+A
Sbjct:  587 LPIDDALLRIDRIPDILGVSDTPTVSENDPEAWHVQIFRSIDSNSVKGFPKDPKDATCKNLVCGKNVLIDMSIHTAYVKAIRAA 670          
BLAST of CK739911 vs. ExPASy Swiss-Prot
Match: PLDG2_ARATH (Phospholipase D gamma 2 OS=Arabidopsis thaliana GN=PLDGAMMA2 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.879e-14
Identity = 33/60 (55.00%), Postives = 48/60 (80.00%), Query Frame = 3
Query:   39 SKEDDPENWHVQILRSIDSGSLKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSA 218
            + ++DPE+WHVQ+ RSIDS S+KGFPK  E+   ++L+C K+++ID SI  AY++AIRSA
Sbjct:  494 ANDNDPESWHVQVFRSIDSTSVKGFPKDPEEATGRNLLCGKNILIDMSIHAAYVKAIRSA 553          
BLAST of CK739911 vs. ExPASy Swiss-Prot
Match: PLDG3_ARATH (Phospholipase D gamma 3 OS=Arabidopsis thaliana GN=PLDGAMMA3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.206e-14
Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 3
Query:   39 SKEDDPENWHVQILRSIDSGSLKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSA 218
            + ++DPE+WHVQ+ RSIDS S+KGFPK  ++   ++L+C K+++ID SI  AY++AIRSA
Sbjct:  504 ANDNDPESWHVQVFRSIDSSSVKGFPKDPKEATGRNLLCGKNILIDMSIHAAYVKAIRSA 563          
BLAST of CK739911 vs. ExPASy Swiss-Prot
Match: PLDG1_ARATH (Phospholipase D gamma 1 OS=Arabidopsis thaliana GN=PLDGAMMA1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.206e-14
Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 3
Query:   39 SKEDDPENWHVQILRSIDSGSLKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSA 218
            + ++DPE+WHVQ+ RSIDS S+KGFPK  ++   ++L+C K+++ID SI  AY++AIRSA
Sbjct:  497 ANDNDPESWHVQVFRSIDSSSVKGFPKDPKEATGRNLLCGKNILIDMSIHAAYVKAIRSA 556          
The following BLAST results are available for this feature:
BLAST of CK739911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PLDD1_ARATH1.436e-2269.44Phospholipase D delta OS=Arabidopsis thaliana GN=P... [more]
PLDB1_ARATH3.787e-1547.62Phospholipase D beta 1 OS=Arabidopsis thaliana GN=... [more]
PLDG2_ARATH1.879e-1455.00Phospholipase D gamma 2 OS=Arabidopsis thaliana GN... [more]
PLDG3_ARATH3.206e-1453.33Phospholipase D gamma 3 OS=Arabidopsis thaliana GN... [more]
PLDG1_ARATH3.206e-1453.33Phospholipase D gamma 1 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6303 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739911 ID=CK739911; Name=CK739911; organism=Citrus sinensis; type=EST; length=218bp
CAACAGTAGTTCCAAGGGATGATAATGTAGTACGTGTTTCAAAGGAGGAT
GATCCTGAAAACTGGCATGTTCAGATTTTGCGGTCCATAGACTCAGGATC
ACTGAAAGGATTTCCAAAATCTATTGAGGACATTGATGACCAGAGCCTTA
TCTGTGCAAAAGATGTGGTGATAGATAAGAGCATTCAAACAGCTTATATC
CAAGCAATCAGATCTGCT
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