CK739912

Overview
NameCK739912
Unique NameCK739912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739912_ssr78 microsatellite CK739912_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK739912 vs. ExPASy Swiss-Prot
Match: MDAR_PEA (Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.274e-30
Identity = 63/78 (80.77%), Postives = 67/78 (85.90%), Query Frame = 2
Query:    2 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYPVGDVATFPMKLY 235
            VGFT N+DGEVKEVKLKDGR LEADIV+VGVGGRP ISLFKGQ  E  GGIKTD FF+TS  DVY VGDVATFP+KLY
Sbjct:  228 VGFTANSDGEVKEVKLKDGRVLEADIVIVGVGGRPQISLFKGQVEEQHGGIKTDSFFKTSVPDVYAVGDVATFPLKLY 305          
BLAST of CK739912 vs. ExPASy Swiss-Prot
Match: MDAR4_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.527e-30
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 2
Query:    5 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYPVGDVATFPMKLY 235
            GFTTN++GEV EVKLKDGRTLEADIV+VGVGGRP+ISLFK Q  E KGG+KTD FF+TS  DVY +GDVATFPMKLY
Sbjct:  231 GFTTNSNGEVTEVKLKDGRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLY 307          
BLAST of CK739912 vs. ExPASy Swiss-Prot
Match: MDARS_CUCSA (Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.244e-29
Identity = 62/78 (79.49%), Postives = 67/78 (85.90%), Query Frame = 2
Query:    2 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYPVGDVATFPMKLY 235
            VGFT + +GEVKEVKLKDGR LEADIVVVGVG RPL SLFKGQ  E KGGIKTD+FF+TS  DVY VGDVATFP+KLY
Sbjct:  229 VGFTVDTNGEVKEVKLKDGRVLEADIVVVGVGARPLTSLFKGQIVEEKGGIKTDEFFKTSVPDVYAVGDVATFPLKLY 306          
BLAST of CK739912 vs. ExPASy Swiss-Prot
Match: MDAR1_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.347e-28
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 2
Query:    5 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYPVGDVATFPMKLYPGNEK 250
            GF+TN+DGEV EVKL+DGRTLEA+IVV GVG RP  SLFKGQ  E KGGIKTD FF+TS  DVY +GDVATFPMK+Y G  +
Sbjct:  232 GFSTNSDGEVTEVKLEDGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKMYGGTRR 313          
BLAST of CK739912 vs. ExPASy Swiss-Prot
Match: MDAR_SOLLC (Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.003e-28
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 2
Query:    2 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYPVGDVATFPMKLY 235
            VGF T+ +GEVKEVKLKDGR LEADIVVVGVG RPL +LFKGQ  E KGGIKTD FF+TS  DVY VGDVATFP+K+Y
Sbjct:  229 VGFDTHPNGEVKEVKLKDGRVLEADIVVVGVGARPLTTLFKGQVEEEKGGIKTDAFFKTSVPDVYAVGDVATFPLKMY 306          
BLAST of CK739912 vs. ExPASy Swiss-Prot
Match: MDAR3_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.917e-28
Identity = 58/77 (75.32%), Postives = 66/77 (85.71%), Query Frame = 2
Query:    5 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYPVGDVATFPMKLY 235
            GFT   +GEVKEV+LKDGRTLEADIV+VGVG +PL SLFKGQ  E+KGGIKTD FF+TS  DVY VGDVATFP+K+Y
Sbjct:  230 GFTAQPNGEVKEVQLKDGRTLEADIVIVGVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMY 306          
BLAST of CK739912 vs. ExPASy Swiss-Prot
Match: MDARF_CUCSA (Monodehydroascorbate reductase, fruit isozyme (Fragments) OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.657e-15
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 2
Query:   17 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYPVGDVATFPMKLY 235
            +AD  V+ +KLKDGRTL+ADIVVVGVGGRPL+SLFK                 TS  DVY VGDVAT+P+KLY
Sbjct:   23 DADQLVEAIKLKDGRTLDADIVVVGVGGRPLVSLFK-----------------TSIPDVYAVGDVATYPLKLY 78          
BLAST of CK739912 vs. ExPASy Swiss-Prot
Match: MDAR2_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.929e-14
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 2
Query:    8 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYPVGDVATFPMKLY 235
            F  +++ +V  V LKDG  L AD+VVVG+G RP  SLF+GQ    KGGIK +   ++S   VY +GDVATFP+KL+
Sbjct:  230 FEFDSNKKVTAVNLKDGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKLF 305          
BLAST of CK739912 vs. ExPASy Swiss-Prot
Match: MDARP_ARATH (Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.611e-14
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 2
Query:   20 ADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENK--GGIKTDDFFRTSADDVYPVGDVATFPMKLY 235
            +DG V  VKL DG T+EAD VV+G+G +P I  F+   A NK  GGI+ D  FRTS   ++ +GDVA FP+K+Y
Sbjct:  288 SDGRVSAVKLADGSTIEADTVVIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIY 360          
The following BLAST results are available for this feature:
BLAST of CK739912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MDAR_PEA3.274e-3080.77Monodehydroascorbate reductase OS=Pisum sativum PE... [more]
MDAR4_ARATH9.527e-3079.22Probable monodehydroascorbate reductase, cytoplasm... [more]
MDARS_CUCSA1.244e-2979.49Monodehydroascorbate reductase, seedling isozyme O... [more]
MDAR1_ARATH2.347e-2871.95Probable monodehydroascorbate reductase, cytoplasm... [more]
MDAR_SOLLC4.003e-2876.92Monodehydroascorbate reductase OS=Solanum lycopers... [more]
MDAR3_ARATH8.917e-2875.32Probable monodehydroascorbate reductase, cytoplasm... [more]
MDARF_CUCSA8.657e-1558.90Monodehydroascorbate reductase, fruit isozyme (Fra... [more]
MDAR2_ARATH1.929e-1451.32Probable monodehydroascorbate reductase, cytoplasm... [more]
MDARP_ARATH5.611e-1451.35Monodehydroascorbate reductase, chloroplastic OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6304 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739912 ID=CK739912; Name=CK739912; organism=Citrus sinensis; type=EST; length=262bp
TGTTGGATTTACCACAAATGCCGATGGAGAGGTCAAAGAAGTGAAGCTGA
AGGACGGCAGGACTCTGGAAGCTGACATTGTTGTTGTTGGTGTAGGAGGA
AGACCTCTTATATCATTATTTAAAGGGCAGTTTGCAGAGAATAAAGGAGG
CATAAAGACTGATGATTTTTTCAGGACAAGTGCTGATGATGTGTACCCTG
TGGGGGATGTGGCAACTTTCCCTATGAAATTGTACCCGGGAAATGAGAAG
AGTTGAGCATTG
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