CK739917

Overview
NameCK739917
Unique NameCK739917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739917_ssr7 microsatellite CK739917_ssr7:7..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK739917 vs. ExPASy Swiss-Prot
Match: U4977_ARATH (UPF0497 membrane protein At2g28370 OS=Arabidopsis thaliana GN=At2g28370 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.182e-35
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 1
Query:  214 MNVSHASVHPVEDPPT--TEGGNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSV 501
            MNVSHASVHPVEDPP   TE  N PRVRM D++GMP T  GLALR  QF+FA AALCVMA+TSDFPSVTAFC+LVAA GLQSLWSL+LA+VD+YA+ V
Sbjct:    1 MNVSHASVHPVEDPPAAATEVENPPRVRMDDMEGMPGTLLGLALRFFQFLFAAAALCVMASTSDFPSVTAFCYLVAATGLQSLWSLALAMVDVYAIMV 98          
BLAST of CK739917 vs. ExPASy Swiss-Prot
Match: U497B_ARATH (UPF0497 membrane protein At2g37200 OS=Arabidopsis thaliana GN=At2g37200 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 59/99 (59.60%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  214 MNVSHASVHPVEDPPTTEGGNA---PRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSV 501
            MNVS  ++HPV+  P      A   P VRMKD+QGMP T GGL LR+SQF+ A+ ++ VM TTSDF S TAFC LV A  LQSLWSLSL I+D YAL V
Sbjct:    2 MNVSRPAIHPVDALPVAPTAGAIDRPPVRMKDVQGMPGTTGGLILRLSQFVPALISVSVMVTTSDFRSATAFCCLVLAVSLQSLWSLSLFIIDAYALLV 100          
BLAST of CK739917 vs. ExPASy Swiss-Prot
Match: U497J_ARATH (UPF0497 membrane protein At3g23200 OS=Arabidopsis thaliana GN=At3g23200 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1
Query:  292 MKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYAL 495
            M DI G P T  GL LR+SQ +FA  ++  M T+  F S TAFC+L+AA GLQ +WS  LAI+D +AL
Sbjct:    1 MIDIPGTPGTLTGLVLRISQCVFAAGSISYMVTSGGFFSFTAFCYLIAAMGLQVIWSFGLAILDTFAL 68          
BLAST of CK739917 vs. ExPASy Swiss-Prot
Match: U497X_ARATH (UPF0497 membrane protein At5g02060 OS=Arabidopsis thaliana GN=At5g02060 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.008e-12
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 1
Query:  292 MKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYAL 495
            MK + G P T  GL LR+ Q   A A++ VM ++ DF + TAFCFLVA+ GLQ +WS  LA +D+YA+
Sbjct:    1 MKKMIGSPGTMSGLILRLGQCATAAASIGVMVSSYDFSNYTAFCFLVASMGLQLIWSFGLACLDVYAI 68          
BLAST of CK739917 vs. ExPASy Swiss-Prot
Match: U497L_ARATH (UPF0497 membrane protein At3g53850 OS=Arabidopsis thaliana GN=At3g53850 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  292 MKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYAL 495
            MK + G P T  GL LR+ Q   A A++ VM +  +F   TAFC+L+A+ GLQ LWS  LA +D+YAL
Sbjct:    1 MKKLLGGPGTVCGLLLRIGQCASAAASIGVMVSAKEFSVHTAFCYLIASMGLQLLWSFGLACLDVYAL 68          
The following BLAST results are available for this feature:
BLAST of CK739917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
U4977_ARATH7.182e-3575.51UPF0497 membrane protein At2g28370 OS=Arabidopsis ... [more]
U497B_ARATH2.560e-2459.60UPF0497 membrane protein At2g37200 OS=Arabidopsis ... [more]
U497J_ARATH3.468e-1352.94UPF0497 membrane protein At3g23200 OS=Arabidopsis ... [more]
U497X_ARATH5.008e-1250.00UPF0497 membrane protein At5g02060 OS=Arabidopsis ... [more]
U497L_ARATH5.537e-1148.53UPF0497 membrane protein At3g53850 OS=Arabidopsis ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6309 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739917 ID=CK739917; Name=CK739917; organism=Citrus sinensis; type=EST; length=503bp
TTTCGCCTTTGCTTTGCTTTGCTCGTAAACAAACATAAGCTCAATCACAG
TTTCTAACGGCAATTACGCTTCGCTGTTAAACTATTTTGCCAGGTTCTTC
ATAATTAAGTGGTAACACGCTGGTGCTTTTAATTCGGTACATAAGTGATA
GTAGCTTACGGAGAGAAATTGAGGGATAGAGAGCTATGAATTGAAGCTTG
TGATCGTCAAGAGATGAACGTGAGCCACGCGTCGGTTCACCCGGTTGAAG
ATCCTCCAACTACAGAAGGTGGGAATGCCCCGAGAGTGAGGATGAAGGAC
ATACAGGGCATGCCGGCGACGCCTGGTGGGCTGGCTTTGCGTGTATCTCA
ATTTATCTTTGCTGTTGCAGCACTTTGTGTGATGGCCACCACTAGCGACT
TTCCTTCGGTCACTGCTTTCTGCTTCCTTGTTGCGGCTGCTGGCTTGCAG
AGTTTGTGGAGCCTTTCACTGGCAATTGTAGATATTTATGCCCTTTCAGT
GAT
back to top