CK739925

Overview
NameCK739925
Unique NameCK739925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1705 contig Csv1_Contig1705:38..526. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739925 vs. ExPASy Swiss-Prot
Match: RK31_ARATH (50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana GN=RPL31 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.203e-45
Identity = 88/132 (66.67%), Postives = 102/132 (77.27%), Query Frame = 1
Query:    7 MAQTLPNTFFQIKPSAPILPTRKVKNCAATGSGYRTR-------VVTCRKKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGLSEIMEIPVLKGEIVLP 381
            MA +LPN+F QI P  P L  RK    A  G     R        +TCRKK++HP+F+EDAKVYCNGELVMTTGGT+KEYVVDVWSGNH FYLG RSA++VDADQVEKFR++F GLSEIMEIPVLKGEI++P
Sbjct:    1 MAVSLPNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHEDAKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIMEIPVLKGEIIMP 132          
BLAST of CK739925 vs. ExPASy Swiss-Prot
Match: RL31_SYNP6 (50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpmE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  133 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGL 333
            K DIHPQ+Y +AKVYCNGE VMT G TQ E  VDVWSGNH FY G +  +  +  +VE+F +K+G L
Sbjct:    3 KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYGML 68          
BLAST of CK739925 vs. ExPASy Swiss-Prot
Match: RL31_SYNE7 (50S ribosomal protein L31 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  133 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGL 333
            K DIHPQ+Y +AKVYCNGE VMT G TQ E  VDVWSGNH FY G +  +  +  +VE+F +K+G L
Sbjct:    3 KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYGML 68          
BLAST of CK739925 vs. ExPASy Swiss-Prot
Match: RL31_PROMA (50S ribosomal protein L31 OS=Prochlorococcus marinus GN=rpmE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.645e-15
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  133 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 327
            KKDIHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KKDIHPNWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CK739925 vs. ExPASy Swiss-Prot
Match: RL31_THEEB (50S ribosomal protein L31 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpmE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.512e-15
Identity = 36/67 (53.73%), Postives = 52/67 (77.61%), Query Frame = 1
Query:  133 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEKFRQKFGG 330
            K +IHPQ+Y +AKVYC+GE++MT G T+ E  VD+WSGNH F+ G +   +VDA+ +VE+FR+K+ G
Sbjct:    3 KPNIHPQWYPEAKVYCDGEVIMTVGSTKPELHVDIWSGNHPFFTGTQK--IVDAEGRVERFRRKYSG 67          
BLAST of CK739925 vs. ExPASy Swiss-Prot
Match: RL31_NOSP7 (50S ribosomal protein L31 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpmE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.512e-15
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  133 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 327
            K DIHP++Y DAKVYCNG++VMT G T+ E  VDVWSGNH FY G +  +  +  +VE+F +K+G
Sbjct:    3 KADIHPKWYPDAKVYCNGQVVMTIGSTKPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYG 66          
BLAST of CK739925 vs. ExPASy Swiss-Prot
Match: RL31_ANAVT (50S ribosomal protein L31 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpmE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.695e-15
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  133 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 327
            K DIHP++Y +AKVYCNG++VMT G T+ E  VDVWSGNH FY G +  +  +  +VE+F +K+G
Sbjct:    3 KSDIHPKWYPEAKVYCNGQVVMTVGSTKPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYG 66          
BLAST of CK739925 vs. ExPASy Swiss-Prot
Match: RL31_ANASP (50S ribosomal protein L31 OS=Anabaena sp. (strain PCC 7120) GN=rpmE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.695e-15
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  133 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 327
            K DIHP++Y +AKVYCNG++VMT G T+ E  VDVWSGNH FY G +  +  +  +VE+F +K+G
Sbjct:    3 KSDIHPKWYPEAKVYCNGQVVMTVGSTKPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYG 66          
BLAST of CK739925 vs. ExPASy Swiss-Prot
Match: RL31_ACAM1 (50S ribosomal protein L31 OS=Acaryochloris marina (strain MBIC 11017) GN=rpmE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.695e-15
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  133 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 327
            K DIHP++Y +AKVYC+GE+VMT G TQ+E  VDVWSGNH F+ G +  +  +  +VE+F +K+G
Sbjct:    3 KPDIHPKWYPEAKVYCDGEVVMTVGSTQEELHVDVWSGNHPFFTGTQKIIDTEG-RVERFMRKYG 66          
BLAST of CK739925 vs. ExPASy Swiss-Prot
Match: RL31_SYNP2 (50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.005e-14
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 1
Query:  133 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGLS 336
            K DIHP++Y DAKV CNGE+VMT G TQ E  V++WSGNH FY G +  +  +  +V++F +K+G LS
Sbjct:    3 KADIHPEWYPDAKVICNGEVVMTIGSTQPEINVEIWSGNHPFYTGTQKIIDTEG-RVDRFLRKYGMLS 69          
The following BLAST results are available for this feature:
BLAST of CK739925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RK31_ARATH3.203e-4566.6750S ribosomal protein L31, chloroplastic OS=Arabid... [more]
RL31_SYNP61.187e-1558.2150S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_SYNE71.187e-1558.2150S ribosomal protein L31 OS=Synechococcus elongat... [more]
RL31_PROMA2.645e-1556.9250S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_THEEB4.512e-1553.7350S ribosomal protein L31 OS=Thermosynechococcus e... [more]
RL31_NOSP74.512e-1555.3850S ribosomal protein L31 OS=Nostoc punctiforme (s... [more]
RL31_ANAVT7.695e-1553.8550S ribosomal protein L31 OS=Anabaena variabilis (... [more]
RL31_ANASP7.695e-1553.8550S ribosomal protein L31 OS=Anabaena sp. (strain ... [more]
RL31_ACAM17.695e-1553.8550S ribosomal protein L31 OS=Acaryochloris marina ... [more]
RL31_SYNP21.005e-1452.9450S ribosomal protein L31 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6317 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739925 ID=CK739925; Name=CK739925; organism=Citrus sinensis; type=EST; length=489bp
CGGAAAATGGCGCAGACTTTGCCCAACACATTCTTCCAAATCAAACCCTC
TGCTCCAATTCTCCCCACCAGAAAGGTGAAGAACTGTGCAGCAACGGGCA
GTGGTTACAGGACCCGGGTGGTGACGTGTCGAAAGAAGGACATACACCCT
CAATTCTACGAGGATGCAAAGGTGTACTGTAACGGTGAGCTCGTAATGAC
GACGGGTGGGACCCAGAAGGAGTACGTGGTGGATGTCTGGTCGGGAAACC
ATGCGTTTTACCTCGGCGGCCGCTCTGCTGTTGTCGTCGACGCCGACCAA
GTCGAGAAGTTCCGTCAGAAGTTCGGAGGATTGTCTGAGATTATGGAAAT
TCCCGTGCTTAAAGGAGAGATTGTGTTGCCGCCTAAGCGCAAGTCCGCGG
CCTCTAAAGGTGGCAAGAAGAAGTAGAAATTTGGTACGACGTTGTTTTTG
AGGTAATTGGGGAATGTTTGTGAGTGGATGGATTTTATT
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