CK739928

Overview
NameCK739928
Unique NameCK739928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12640 contig Csv1_Contig12640:1183..1599. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739928 vs. ExPASy Swiss-Prot
Match: HSP7M_PHAVU (Heat shock 70 kDa protein, mitochondrial OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 41/85 (48.24%), Postives = 50/85 (58.82%), Query Frame = 3
Query:    6 EELG*VQRKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKA*CS*PKLSLRLDNTWXXXXXXXXXXXXXXXXEQTPEAEYEEVKK 260
            + LG  + KIPSE AKEIEDAV+DLRKAM  DNVD+IKSK   +   +S   ++                  +Q PEAEYEEVKK
Sbjct:  591 KSLGEYREKIPSETAKEIEDAVSDLRKAMSGDNVDEIKSKLDAANKAVSKIGEHMSGGSSGGSSAGGSQGGGDQAPEAEYEEVKK 675          
The following BLAST results are available for this feature:
BLAST of CK739928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HSP7M_PHAVU5.151e-1248.24Heat shock 70 kDa protein, mitochondrial OS=Phaseo... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6750 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739928 ID=CK739928; Name=CK739928; organism=Citrus sinensis; type=EST; length=419bp
ATTGAGAAGAGCTTGGGTGAGTACAGAGAAAGATTCCCAGTGAGGTTGCA
AAAGAGATTGAGGATGCTGTTGCAGATTTGAGAAAGGCCATGGGAGCTGA
CAATGTTGATGATATCAAGTCCAAAGCTTGATGCAGCTAACCAAAGCTGT
CTCTAAGATTGGACAACACATGGCTGGTGGTTCTGGTGGTGGGTGCTGGT
TCTGGAGGTTCCCAGGGTGGTGAACAGACTCCCGAGGCTGAGTATGAGGA
GGTGAAAAAGTGAGCACAGAGGTAGTAAATTTCGTTCGTTGATGCTTCAA
AAGGAGTCGGACATTCAGGGATGAGTCTTGTTTTGATTTGTAGTTTAGGA
TATATGGCGGTTTTGTATCTAAATTTTTATTTATTCAAGTTGTTAGGATA
ACGTTTACTTTATTTTGAG
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