CK739929

Overview
NameCK739929
Unique NameCK739929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 7.810e-77
Identity = 136/170 (80.00%), Postives = 148/170 (87.06%), Query Frame = 1
Query:    1 FVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFHDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFVF 510
            FVI I  GVYEE V VPFEKKNVVF+GDGMGKTVITGSLN G  G++TY +ATVGV+GDGFMA  LT QNTAGPDAHQAVAFRSDSD S+IENCEFLGNQDTLYAH LRQFYK CRIQGNVDFIFGNS ++F DCEIL+APRQ+ PEKGE NAVTA GR DP+Q +GFVF
Sbjct:  270 FVIKISEGVYEENVIVPFEKKNVVFIGDGMGKTVITGSLNAGMPGITTYNTATVGVVGDGFMARDLTFQNTAGPDAHQAVAFRSDSDFSLIENCEFLGNQDTLYAHGLRQFYKNCRIQGNVDFIFGNSAAVFQDCEILIAPRQINPEKGEKNAVTAQGRIDPSQSTGFVF 439          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 1.247e-74
Identity = 135/171 (78.95%), Postives = 153/171 (89.47%), Query Frame = 1
Query:    1 FVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFHDCEILVAPRQLKPEK-GENNAVTAHGRTDPAQWSGFVF 510
            FVI I+ GVYEETVRVPFEKKNVVF+GDGMGKTVITGSLNVGQ G++T+ESATVGVLGDGFMA  LTI+NTAG DAHQAVAFRSDSD S++ENCEFLGNQDTLYAHSLRQFYK+CRIQGNVDFIFGNS ++F DC+IL+A +  K E+ G NNA+TAHGR D +Q +GFVF
Sbjct:  320 FVIRIREGVYEETVRVPFEKKNVVFIGDGMGKTVITGSLNVGQPGMTTFESATVGVLGDGFMARDLTIENTAGADAHQAVAFRSDSDFSVLENCEFLGNQDTLYAHSLRQFYKQCRIQGNVDFIFGNSAAVFQDCDILIASKHSKLEQGGANNAITAHGRIDASQSTGFVF 490          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.345e-44
Identity = 91/169 (53.85%), Postives = 112/169 (66.27%), Query Frame = 1
Query:    1 FVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFHDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFV 507
            FVI+IKAGVY E V V  +K N++FLGDG GKT+ITGS NV   G +T+ SATV  +G+ F+A  +T QNTAGP  HQAVA R  SD S    C+    QDTLY HS RQF+ KC I G VDFIFGN+ ++  DC+I       +P  G+ N VTA GR+DP Q +G V
Sbjct:  305 FVIHIKAGVYRENVEVTKKKTNIMFLGDGRGKTIITGSRNV-VDGSTTFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDI----NARRPNSGQKNMVTAQGRSDPNQNTGIV 468          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.756e-44
Identity = 91/169 (53.85%), Postives = 113/169 (66.86%), Query Frame = 1
Query:    1 FVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFHDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFV 507
            +VI+IKAGVY E V V  +KKN++F+GDG  +T+ITGS NV   G +T+ SATV  +G+ F+A  +T QNTAGP  HQAVA R  SD S   NC+ L  QDTLY HS RQF+ KC I G VDFIFGN+  +  DC+I       +P  G+ N VTA GRTDP Q +G V
Sbjct:  310 YVIHIKAGVYRENVEVAKKKKNIMFMGDGRTRTIITGSRNV-VDGSTTFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYNCDMLAYQDTLYVHSNRQFFVKCLIAGTVDFIFGNAAVVLQDCDI----HARRPNSGQKNMVTAQGRTDPNQNTGIV 473          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.995e-44
Identity = 89/169 (52.66%), Postives = 114/169 (67.46%), Query Frame = 1
Query:    1 FVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFHDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFV 507
            ++I IKAGVY E V V  + KN++F+GDG  +T+ITGS NV   G +T++SAT  V+G+GF+A  +T QNTAGP  HQAVA R  +DLS   NC+ L  QDTLY HS RQF+  C I G VDFIFGN+ ++  +C+I       KP  G+ N VTA GRTDP Q +G V
Sbjct:  302 YIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNV-VDGSTTFKSATAAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDI----HARKPNSGQKNMVTAQGRTDPNQNTGIV 465          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.912e-44
Identity = 89/169 (52.66%), Postives = 114/169 (67.46%), Query Frame = 1
Query:    1 FVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFHDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFV 507
            ++I IKAGVY E V V  + KN++F+GDG  +T+ITGS NV   G +T++SATV V+G+GF+A  +T QNTAGP  HQAVA R  +DLS   NC+ L  QDTLY HS RQF+  C I G VDFIFGN+ ++  +C+I       KP  G+ N VTA GR DP Q +G V
Sbjct:  302 YIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNV-VDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDI----HARKPNSGQKNMVTAQGRADPNQNTGIV 465          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.487e-43
Identity = 89/169 (52.66%), Postives = 115/169 (68.05%), Query Frame = 1
Query:    1 FVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFHDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFV 507
            +VI IKAG Y E + V    KN++F+GDG+GKT+ITGS +VG  G +T++SATV V+GD F+A  +TI+NTAGP+ HQAVA RS SDLS+   C F G QDTLY HS RQFY++C I G VDFIFGN+  +  +C I       +      N +TA GRTDP Q +G +
Sbjct:  231 YVIYIKAGTYNENIEVKL--KNIMFVGDGIGKTIITGSKSVGG-GATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFA-----RKPPNRTNTLTAQGRTDPNQSTGII 391          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 9.635e-43
Identity = 91/169 (53.85%), Postives = 110/169 (65.09%), Query Frame = 1
Query:    1 FVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFHDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSGFV 507
            +VI IKAGVY E V VP +KKN++FLGDG   T+IT S NV Q G +T+ SATV  +G GF+A  +T QNTAG   HQAVA R  SDLS    C+ L  QD+LY HS RQF+  C I G VDFIFGN+  +  DC+I       +P  G+ N VTA GRTDP Q +G V
Sbjct:   37 YVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNV-QDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDI----HARRPGSGQKNMVTAQGRTDPNQNTGIV 200          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME25_ARATH (Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.782e-42
Identity = 86/167 (51.50%), Postives = 114/167 (68.26%), Query Frame = 1
Query:    1 FVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFHDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSG 501
            FVI  + GVYEE + VP  KKN++ +GDG+ KT+ITG+ NV   G +TY  ++  V+G+ FMA  +T +NTAGP+ HQAVA R++++ S    C F G QDTLY HSLRQFY++C I G VDFIFGN+ +IF +C I       KP   + NA+TAHGR DP Q +G
Sbjct:  334 FVIYAREGVYEEYIVVPINKKNLMLMGDGINKTIITGNHNV-VDGWTTYNCSSFAVVGERFMAVDVTFRNTAGPEKHQAVALRNNAEGSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNIYAR----KPMAKQKNAITAHGRLDPNQNTG 495          
BLAST of CK739929 vs. ExPASy Swiss-Prot
Match: PME47_ARATH (Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.157e-42
Identity = 85/167 (50.90%), Postives = 116/167 (69.46%), Query Frame = 1
Query:    1 FVINIKAGVYEETVRVPFEKKNVVFLGDGMGKTVITGSLNVGQQGVSTYESATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSIIENCEFLGNQDTLYAHSLRQFYKKCRIQGNVDFIFGNSPSIFHDCEILVAPRQLKPEKGENNAVTAHGRTDPAQWSG 501
            FVI  +AG+YEE V +  +K+N++ +GDG+ KT+I+G+ +    G +TY S+T  V+GD F+A  +T +NTAGP+ HQAVA R+++D S    C F G QDTLY HSLRQFY++C I G +DFIFGN+ +IF +C I       KP   + NAVTAHGRTDP Q +G
Sbjct:  339 FVIYARAGLYEEYVVISNKKRNIMLIGDGINKTIISGNHSF-IDGWTTYNSSTFAVVGDRFVAVDVTFRNTAGPEKHQAVAVRNNADGSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAAIFQNCNIYAR----KPMANQKNAVTAHGRTDPNQKTG 500          
The following BLAST results are available for this feature:
BLAST of CK739929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PME51_ARATH7.810e-7780.00Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME64_ARATH1.247e-7478.95Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME2_ARATH1.345e-4453.85Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH1.756e-4453.85Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME1_CITSI2.995e-4452.66Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME3_CITSI3.912e-4452.66Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME2_CITSI1.487e-4352.66Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME_DAUCA9.635e-4353.85Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME25_ARATH4.782e-4251.50Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME47_ARATH8.157e-4250.90Probable pectinesterase/pectinesterase inhibitor 4... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6751 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739929 ID=CK739929; Name=CK739929; organism=Citrus sinensis; type=EST; length=512bp
TTTGTGATTAACATAAAGGCCGGTGTTTATGAGGAGACCGTTAGGGTTCC
ATTCGAGAAAAAGAACGTGGTGTTTTTAGGCGACGGCATGGGCAAAACGG
TCATTACAGGTTCTTTAAACGTGGGACAGCAAGGGGTTAGCACTTACGAA
TCTGCTACCGTCGGAGTTCTTGGTGATGGGTTCATGGCCAGTGGTCTCAC
AATTCAGAACACGGCAGGTCCTGATGCCCACCAAGCAGTGGCCTTTAGAT
CAGACAGTGATCTCTCCATTATTGAGAACTGTGAATTCTTGGGCAATCAA
GACACTCTATATGCTCATTCCCTTCGGCAATTCTACAAAAAGTGCCGCAT
TCAGGGCAATGTGGACTTCATTTTCGGAAACTCACCGTCAATCTTCCATG
ATTGCGAGATCTTGGTTGCTCCGCGGCAATTAAAGCCGGAGAAAGGTGAG
AACAATGCAGTGACTGCTCATGGCAGAACGGACCCTGCTCAATGGTCAGG
TTTCGTTTTCCA
back to top