CK739936

Overview
NameCK739936
Unique NameCK739936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739936_ssr30 microsatellite CK739936_ssr30:30..39. BLAST: Citrus ESTs to Prunus persica proteins V1
CK739936_ssr60 microsatellite CK739936_ssr60:60..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK739936 vs. ExPASy Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.144e-39
Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 2
Query:  194 FTMGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGRGFCYGGMKLAARVENPPSPPSASP 448
            F +GDWL+FV+DRNQ N+LEVNKTDYE C +DHP+ NWT GAGRD+V LN T+HYY + G+G CYGGMKL+ +VE  P PP ++P
Sbjct:   52 FYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPPPPKSAP 136          

HSP 2 Score: 47.3654 bits (111), Expect = 3.144e-39
Identity = 19/34 (55.88%), Postives = 24/34 (70.59%), Query Frame = 1
Query:  103 PEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNG 204
            P V A ++ VG N+ W  N+NYTIWA+ KHFY G
Sbjct:   22 PGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLG 55          
The following BLAST results are available for this feature:
BLAST of CK739936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LAML_ARATH3.144e-3964.71Lamin-like protein OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6758 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739936 ID=CK739936; Name=CK739936; organism=Citrus sinensis; type=EST; length=450bp
TCTTTTTGGAAGGCTGAGAGTGCGGGAGTGAGAGAGAGAATGAGGGCAGG
AATGACGGTGGCGGCGGCGGCCGTGCTGGTGGTTGCCATGACGATTCTGG
TGCCGGAGGTGGATGCAACTAGATGGATTGTGGGAGCCAACCAAGGTTGG
ACCAATAACGTGAACTATACCATATGGGCAAAAGATAAGCACTTTTACAA
TGGGGGACTGGCTCTTCTTTGTGTATGACAGGAACCAGATGAATGTGCTA
GAGGTGAACAAAACAGACTACGAATCATGCAACTCTGATCATCCCCTTCA
CAACTGGACCACAGGAGCAGGAAGAGATGTGGTTCCTCTGAATGTGACCC
GGCATTACTACTTCATCAGCGGAAGGGGCTTCTGCTATGGTGGCATGAAG
TTAGCTGCCCGTGTTGAGAACCCGCCTTCTCCTCCCTCGGCTTCCCCTAT
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