CK739938

Overview
NameCK739938
Unique NameCK739938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739938_ssr440 microsatellite CK739938_ssr440:440..449. BLAST: Citrus ESTs to Prunus persica proteins V1
CK739938_ssr258 microsatellite CK739938_ssr258:258..269. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10301 contig Csv1_Contig10301:577..1146. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739938 vs. ExPASy Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.111e-18
Identity = 55/114 (48.25%), Postives = 67/114 (58.77%), Query Frame = 3
Query:    3 TGNLGTENSNYLQKMGFPGFDLPGTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQQMGHARVXXXXXXXXXXXXXXXXXXV---NKDDSQGSGQ 335
            T  L +E + Y  ++GFPGFD PG       +G MSF SILG   NQ +PGLELGLSQ+G++GVLNPQ+ TQIYQQMG A+                        KDDSQGSG+
Sbjct:  211 TTGLMSEGAGY--RIGFPGFDFPG-------VGHMSFASILGGNHNQ-MPGLELGLSQEGNVGVLNPQSFTQIYQQMGQAQAQAQGRVLHHMHHNHEEHQQESGEKDDSQGSGR 314          
The following BLAST results are available for this feature:
BLAST of CK739938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TCP20_ARATH8.111e-1848.25Transcription factor TCP20 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6760 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739938 ID=CK739938; Name=CK739938; organism=Citrus sinensis; type=EST; length=570bp
CAACAGGGAATTTAGGGACCGAAAATTCTAATTATTTGCAAAAGATGGGG
TTCCCTGGGTTTGACCTGCCAGGTACAGGAACTGCTACTACTAACATGGG
TCCTATGAGTTTTACTTCTATTTTGGGTAGTGCTAGTAATCAGCAGTTAC
CTGGTTTGGAGCTTGGGTTGTCGCAAGATGGTCATATTGGGGTTTTGAAT
CCACAAACTTTGACTCAAATTTATCAGCAGATGGGTCATGCTAGGGTGCA
TCAGCAACAGCAGCAGCAGCAACATCCGCAACAGCAGCAGCAAGCAGCTC
CTGTTAATAAGGATGATTCACAAGGGTCAGGGCAGTAGAGTGAAGGAGTA
GCATTGTTTGAGAGCCTGAGGTGTTTTCTTTTTTTCATGGTTTAAACTAT
TGTATAATTGGGATAAAAAGGAAAAAAAAAATGCTACTTGAGAGAGAGAA
TTCAGTAGGGACTGGATTTGGTTTGCCCCTTCTTCTGATCTTCTCCACTA
CATGATTGATCAGCCCTAAGTCTCCTTATACAGGTGGCACTATGCACGGC
CTAATATAGTTTGGGTTGGG
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