CK739939

Overview
NameCK739939
Unique NameCK739939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2210 contig Csv1_Contig2210:149..619. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739939 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.807e-23
Identity = 58/107 (54.21%), Postives = 65/107 (60.75%), Query Frame = 3
Query:   15 LVHKPSIVA*SSPVLGLPAKAVKGKVRCSMEEKPSKQESKT--NVGXXXXXXXXXXXXXXXXXXXXLVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYA 329
            LVH   +   SSP+LGLP+   + KV CS+E KPS  E+ T  N                      LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIWALY  YA
Sbjct:   18 LVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYA 124          
BLAST of CK739939 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.482e-17
Identity = 56/106 (52.83%), Postives = 65/106 (61.32%), Query Frame = 3
Query:   15 LVHKPSIVA*SSPVLGLPAKAVK-GKVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXX-LVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 326
            L+ KP+ VA S+PVLGLP    K G VRCSME   +KQ + + +G                     LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIW  +  Y
Sbjct:   18 LLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVY 119          
BLAST of CK739939 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.933e-13
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 3
Query:  207 LVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 326
            LVD+RMSTEGTGL  GLSNNLLGWILLGVFGLIW+LY  Y
Sbjct:   70 LVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIY 109          
The following BLAST results are available for this feature:
BLAST of CK739939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSBW_SPIOL1.807e-2354.21Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH1.482e-1752.83Photosystem II reaction center W protein, chloropl... [more]
PSBW_ORYSJ4.933e-1385.00Photosystem II reaction center W protein, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6761 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739939 ID=CK739939; Name=CK739939; organism=Citrus sinensis; type=EST; length=471bp
TTACACCCTCGGTTCTTGTACACAAGCCATCCATTGTAGCTTAATCATCC
CCTGTTCTTGGATTGCCAGCAAAGGCAGTGAAGGGGAAAGTGAGATGTTC
GATGGAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGA
GTGCGTCACTGCTGGCAGCAGCATGCGCGGCAACAATGTCAAGCCCAGCC
ATGGCTCTTGTTGATGATAGAATGAGCACTGAAGGAACAGGGCTTCCATT
TGGCTTGAGCAACAACCTCCTTGGGTGGATTCTGTTGGGTGTTTTTGGTC
TCATCTGGGCCCTCTACATTCCTTACGCTTCCAGTCTTGATGAAGATGAA
GAGTCCGGATTGTCCCTCTAACAGTCCGAAGTCTAAAGCCAAACCCCTTG
TTGGTAGAAATGTAAAGAGTTTGGCCTTTTTCCTTAAATTTGTTTTAGTA
AAATCTATCTTTTGTGTTTCA
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