CK739939
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK739939 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.807e-23 Identity = 58/107 (54.21%), Postives = 65/107 (60.75%), Query Frame = 3 Query: 15 LVHKPSIVA*SSPVLGLPAKAVKGKVRCSMEEKPSKQESKT--NVGXXXXXXXXXXXXXXXXXXXXLVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYA 329 LVH + SSP+LGLP+ + KV CS+E KPS E+ T N LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIWALY YA Sbjct: 18 LVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYA 124
BLAST of CK739939 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 1.482e-17 Identity = 56/106 (52.83%), Postives = 65/106 (61.32%), Query Frame = 3 Query: 15 LVHKPSIVA*SSPVLGLPAKAVK-GKVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXX-LVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 326 L+ KP+ VA S+PVLGLP K G VRCSME +KQ + + +G LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIW + Y Sbjct: 18 LLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVY 119
BLAST of CK739939 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 4.933e-13 Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 3 Query: 207 LVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 326 LVD+RMSTEGTGL GLSNNLLGWILLGVFGLIW+LY Y Sbjct: 70 LVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIY 109 The following BLAST results are available for this feature:
BLAST of CK739939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK739939 ID=CK739939; Name=CK739939; organism=Citrus sinensis; type=EST; length=471bpback to top |