CK739940

Overview
NameCK739940
Unique NameCK739940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13656 contig Csv1_Contig13656:548..1041. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739940 vs. ExPASy Swiss-Prot
Match: CIPKN_ARATH (CBL-interacting serine/threonine-protein kinase 23 OS=Arabidopsis thaliana GN=CIPK23 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 3 
Query:  309 RITMAEVIENEWFKKGYKPPSFEQPNIDLDDVDSIFNESMDSRNLVVERREEGPVAPLTMNA 494
            RIT AEVIENEWFKKGYK P FE  ++ LDDVD+IF++S +S+NLVVERREEG   P+TMNA
Sbjct:  274 RITFAEVIENEWFKKGYKAPKFENADVSLDDVDAIFDDSGESKNLVVERREEGLKTPVTMNA 335
[Close]
BLAST of CK739940 vs. ExPASy Swiss-Prot
Match: CIPKN_ORYSJ (CBL-interacting protein kinase 23 OS=Oryza sativa subsp. japonica GN=CIPK23 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 3 
Query:  309 RITMAEVIENEWFKKGYKPPSFEQPNIDLDDVDSIFNESMDSRNLVVERREEGP 470
            RIT+AE+I NEWFKKGY+PP FE  +++LDD++SIFNES D   LVVERREE P
Sbjct:  256 RITIAELINNEWFKKGYQPPRFETADVNLDDINSIFNESGDQTQLVVERREERP 309
The following BLAST results are available for this feature:
BLAST of CK739940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CIPKN_ARATH3.074e-1970.97CBL-interacting serine/threonine-protein kinase 23... [more]
CIPKN_ORYSJ1.579e-1568.52CBL-interacting protein kinase 23 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6762 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739940 ID=CK739940; Name=CK739940; organism=Citrus sinensis; type=EST; length=494bp
GAACGTTGTCCATTTTATGAGCTCAAAGCTTGGGTTCCTAATTTGATTTC
AGATATTTAAGGCTGACTTCAAGAGTCCTCCATGGTTCTCGACAAGTGCA
AAGAAACCTGATCTCAAGAATTTTGGACCCTAATCCTGTGACAGTACTCC
TCTTTTTCTTATGCTTTTTGTGCATGCCTCATCTTGCTTGTGAAACTTAG
CATTTCTCTTGTTGAAAGGGTCGGGGAACTCAATTTTCTGAGTTGCATGT
TATGTAATTGCATTTTGACTACTTATGAGTTCACTATATGTGCTGATGGT
TTGAACAGCGAATAACGATGGCTGAGGTTATTGAGAATGAGTGGTTTAAG
AAGGGATATAAGCCACCTAGTTTTGAACAACCTAATATTGATCTTGATGA
TGTGGATTCTATCTTTAATGAATCGATGGATTCTCGAAACCTTGTTGTGG
AGAGGCGAGAAGAAGGCCCTGTTGCACCTCTCACTATGAATGCG
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