CK739941

Overview
NameCK739941
Unique NameCK739941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3951 contig Csv1_Contig3951:339..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.437e-30
Identity = 74/158 (46.84%), Postives = 107/158 (67.72%), Query Frame = 1
Query:    1 ETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRI 462
            E +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G V   ++P+R+
Sbjct:   16 ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 170          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.877e-30
Identity = 73/158 (46.20%), Postives = 107/158 (67.72%), Query Frame = 1
Query:    1 ETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRI 462
            E +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G +   ++P+R+
Sbjct:   16 ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRL 170          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.452e-30
Identity = 74/158 (46.84%), Postives = 106/158 (67.09%), Query Frame = 1
Query:    1 ETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRI 462
            E +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G V    +P+R+
Sbjct:   16 ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRL 170          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.182e-30
Identity = 73/158 (46.20%), Postives = 106/158 (67.09%), Query Frame = 1
Query:    1 ETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRI 462
            E +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+ ++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE  G V   ++P+R+
Sbjct:   16 ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 170          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 74/158 (46.84%), Postives = 105/158 (66.46%), Query Frame = 1
Query:    1 ETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRI 462
            E +++  FA  GE V++VK+IRN+ TG   GY F+EF   A AE+ L   NG P+P     + F+LN+A++G  ++ D++P++++FVGDL  DV D ML E F   YPS +G KVV+D  TG +KGYGFV+F DE EQ RA+TE  G V    +P+R+
Sbjct:   16 ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRL 170          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.381e-27
Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = 1
Query:    1 ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 465
            E ++   +   G+ V VK+IRN+ TG   GY F+EF S   A   + + N  P+P     F+LNWAS G   ++      +++IFVGDL+ +V ++ +   F +RY S K AK++ D  T  ++GYGFVRF DE++Q  A+ EM G  C  RP+R+G
Sbjct:  106 EAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVG 261          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.805e-26
Identity = 64/158 (40.51%), Postives = 90/158 (56.96%), Query Frame = 1
Query:    4 TYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT---PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 462
            T++   +A   E V VKV+R+K +    +  Y F++F S A AER L  +N T +P     F+LNWA+ G  +  +     P+ +IFVGDL     D  L  TFR+ YPS   AK+++D +TG ++ YGFVRF  E EQ  A+  M G  C  RP+RI
Sbjct:   99 TFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRI 256          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.539e-24
Identity = 62/158 (39.24%), Postives = 96/158 (60.76%), Query Frame = 1
Query:    1 ETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP--NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE-MNGVFCSTRPMRI 462
            E ++   F+  GE    VK+I ++ TG   GY F+E    A  +R +Q  NG  +P  N  + F+LN+A++G  ++ +  P+ ++FVGDL ++V DY L + F  ++PS KGAKVV D   G ++GYGFV+F DE+EQ +A+ E  N      +P+RI
Sbjct:   19 ENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG--KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRI 173          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.032e-20
Identity = 61/175 (34.86%), Postives = 97/175 (55.43%), Query Frame = 1
Query:   88 GYGFIEFISRAGAERVLQTFNGTPMPNG-------------EQNFRLNWASFGAGEKR-DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGQL-----LIRKLFQGQQQYPKASYQNSQVAQSDDD 555
            GY F+EF ++  A+  L + N TP+PN              ++ FRLNWAS    +     TP+ ++FVGDL+   T+  L   F+ R+ S K  +V+ D LTG ++ +GFVRFGDE E+ RA+ EM+G +   R +R+        ++ +L + QQQ  +   Q+ Q+ Q D++
Sbjct:  129 GYCFVEFETQKDAKFAL-SLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQQLQQQHQQLDQEDNN 302          
BLAST of CK739941 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.491e-19
Identity = 62/193 (32.12%), Postives = 97/193 (50.26%), Query Frame = 1
Query:    1 ETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGQLLIRKLFQGQQQYPKASYQNSQVAQSDDDPNNTT 570
            E ++   FA  GE VV +++IR+K TG+  GYGF+E       ER L+  NG P+P     + F+L+ +++G   K+ ++   ++FV DL  DV D ML E F   + S    K+V+D   G +K  GFV F  E EQ RA+ ++ G         +G+  +R      +   K     +Q+ Q   D  N +
Sbjct:   15 EDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRALVDLQGA------TGLGKKALRLSLASSRVNKKKESSENQIWQYHSDSKNAS 197          
The following BLAST results are available for this feature:
BLAST of CK739941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
TSAP1_HUMAN1.437e-3046.84tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN1.877e-3046.20tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_RAT2.452e-3046.84tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_PONAB4.182e-3046.20tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSAP1_MOUSE5.462e-3046.84tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
YG41_SCHPO7.381e-2739.49Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
CSX1_SCHPO2.805e-2640.51RNA-binding post-transcriptional regulator csx1 OS... [more]
TSP1L_DANRE1.539e-2439.24tRNA selenocysteine 1-associated protein 1-like OS... [more]
NGR1_YEAST1.032e-2034.86Negative growth regulatory protein NGR1 OS=Sacchar... [more]
TSAP1_DANRE1.491e-1932.12tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6763 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739941 ID=CK739941; Name=CK739941; organism=Citrus sinensis; type=EST; length=574bp
GAGACCTATCTCAACACTTGTTTTGCACACACCGGCGAGGTTGTCGCTGT
AAAAGTAATTCGTAATAAGCAAACTGGTCAAATAGAAGGTTATGGATTTA
TTGAGTTTATTTCGCGTGCTGGTGCTGAAAGAGTTTTGCAGACATTTAAC
GGTACCCCTATGCCAAACGGTGAGCAGAACTTCAGGCTAAACTGGGCATC
TTTTGGTGCTGGCGAGAAGCGCGATGACACCCCTGACCACACAATATTTG
TTGGAGATTTGGCTGCTGACGTTACTGATTACATGCTTCAAGAGACCTTC
AGGGCCCGCTATCCCTCTACTAAAGGTGCAAAGGTTGTCATTGATAGGCT
TACTGGACGCACAAAGGGTTATGGATTTGTGAGATTTGGTGATGAAAGTG
AACAGCTACGTGCCATGACTGAGATGAATGGTGTCTTTTGTTCTACGAGA
CCAATGCGGATTGGCCAGCTACTAATAAGAAAACTGTTTCAAGGTCAGCA
GCAGTACCCTAAAGCTTCATATCAGAATTCTCAAGTGGCACAGAGTGATG
ACGATCCAAATAATACAACGGGGT
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