CK739943

Overview
NameCK739943
Unique NameCK739943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3514 contig Csv1_Contig3514:535..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK739943 vs. ExPASy Swiss-Prot
Match: Y5994_ARATH (Uncharacterized protein At5g49945 OS=Arabidopsis thaliana GN=At5g49945 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.614e-45
Identity = 83/116 (71.55%), Postives = 104/116 (89.66%), Query Frame = 2 
Query:    2 ADELGVVSESKEVAGDLITDTVLEQVFGEKAFEKHGKDFISMHFSDQHPGTHRKMLLFKFALPDANNMADMTRLVALVPYYIDLIGRYKLSPQARSKTEAARQKAAQEAYKELQNA 349
            ++E  ++SESKEVA DLITDTVL+QVFG+KA +K+GK+F+SMH SDQHPG H+KM+LFKF+LPDA +M D+ RLVAL+PYYIDL+GRY+LS QAR+KTE+ RQKAA+EAYKEL NA
Sbjct:  312 SEEFALISESKEVAADLITDTVLDQVFGDKAVDKYGKNFMSMHISDQHPGKHKKMMLFKFSLPDAKHMDDIVRLVALIPYYIDLVGRYRLSSQARNKTESGRQKAAEEAYKELHNA 427
The following BLAST results are available for this feature:
BLAST of CK739943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5994_ARATH3.614e-4571.55Uncharacterized protein At5g49945 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6765 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739943 ID=CK739943; Name=CK739943; organism=Citrus sinensis; type=EST; length=349bp
GGCGGATGAATTGGGTGTTGTTTCGGAGAGTAAGGAGGTTGCTGGGGATT
TGATCACAGATACTGTGCTTGAACAGGTGTTCGGCGAAAAAGCTTTTGAA
AAACATGGAAAGGATTTCATATCAATGCATTTTTCTGATCAACACCCTGG
CACACATAGGAAGATGCTGTTGTTTAAGTTTGCCCTACCTGATGCCAACA
ACATGGCTGATATGACTCGATTGGTTGCTCTTGTACCCTATTACATTGAT
TTGATCGGACGTTACAAGCTCAGTCCACAGGCTCGATCTAAAACAGAGGC
AGCCAGACAGAAGGCAGCCCAAGAGGCATACAAAGAACTTCAAAATGCT
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