CK739944

Overview
NameCK739944
Unique NameCK739944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length221
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11875 contig Csv1_Contig11875:380..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.425e-30
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 204
            LSMANAGP TNGSQFF+CTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRT K VV+ DCGQLS
Sbjct:  105 LSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.692e-29
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 204
            LSMANAGPGTNGSQFF+CT KT WLDGKHVVFGQVVEGMDVV+AIEKVGS SG+T KPV IADCGQLS
Sbjct:   83 LSMANAGPGTNGSQFFICTEKTAWLDGKHVVFGQVVEGMDVVRAIEKVGSQSGQTKKPVKIADCGQLS 150          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 5.998e-29
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 201
            LSMANAGPGTNGSQFF+CTAKTEWL+GKHVVFGQVVEGMDV+K  E VGSSSGR +KPVVIADCGQL
Sbjct:  105 LSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.336e-28
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 204
            LSMANAG  TNGSQFF+CT KT+WLDGKHVVFGQVVEG+DVVKAIEKVGSSSG+  KPVV+ADCGQLS
Sbjct:  105 LSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.078e-28
Identity = 56/68 (82.35%), Postives = 63/68 (92.65%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 204
            LSMANAG  TNGSQFF+CT KT+WLDGKHVVFGQVVEG+DVVKAIEK+GSSSG+  KPVVIADCG++S
Sbjct:  106 LSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.520e-27
Identity = 55/68 (80.88%), Postives = 63/68 (92.65%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 204
            LSMANAG GTNGSQFF+CT KTEWLDGKHVVFG+V+EGM+VV+ IEKVGS SG+T++PV IADCGQLS
Sbjct:  105 LSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.291e-27
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 204
            LSMANAG  TNGSQFF+CT KT WLDGKHVVFGQVVEG++VV+ IEKVGS SGRT+KPVVIADCGQ+S
Sbjct:  106 LSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.576e-27
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 204
            LSMAN+GP TNGSQFF+CT KT WLDGKHVVFGQVV+G+DVVKAIEKVGS SG+T+K V I DCGQLS
Sbjct:  105 LSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQLS 172          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.786e-26
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 204
            LSMANAGP TNGSQFF+CT  T WLDGKHVVFGQVVEGMDVVKAIEKVG+ +G T+K V +ADCGQLS
Sbjct:  105 LSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          
BLAST of CK739944 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.753e-26
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    1 LSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 204
            LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SGRT+K +VI DCGQLS
Sbjct:  140 LSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 207          
The following BLAST results are available for this feature:
BLAST of CK739944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
CYPH_CATRO5.425e-3091.18Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_ALLCE2.692e-2988.24Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
CYPH_SOLLC5.998e-2988.06Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CP18C_ARATH1.336e-2885.29Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CP19B_ARATH5.078e-2882.35Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CYPH_LUPLU2.520e-2780.88Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CP19A_ARATH3.291e-2782.35Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CP18D_ARATH9.576e-2780.88Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CYPH_MAIZE2.786e-2680.88Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
PPIF_HUMAN4.753e-2679.41Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6766 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739944 ID=CK739944; Name=CK739944; organism=Citrus sinensis; type=EST; length=221bp
CTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGT
CTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTC
AGGTCGTCGAAGGGATGGACGTCGTCAAGGCCATCGAGAAAGTGGGGTCC
AGCTCCGGCAGGACCAACAAGCCCGTCGTGATCGCTGATTGCGGTCAATT
GTCTTAGATTTGATCATGATA
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