CK739946

Overview
NameCK739946
Unique NameCK739946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length166
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7808 contig Csv1_Contig7808:509..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739946 vs. ExPASy Swiss-Prot
Match: FLA12_ARATH (Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana GN=FLA12 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.552e-16
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 3
Query:    3 TFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDPSELKPPAPAPAP 161
            T GN+VNI+SG+TNT+VSG VY+DGQLAVYQVDKVLLP    + +PPAPAPAP
Sbjct:  146 TSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVFDPRPPAPAPAP 198          
The following BLAST results are available for this feature:
BLAST of CK739946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FLA12_ARATH4.552e-1673.58Fasciclin-like arabinogalactan protein 12 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6768 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739946 ID=CK739946; Name=CK739946; organism=Citrus sinensis; type=EST; length=166bp
CTACTTTTGGCAATTCAGTGAACATATCATCAGGCATTACCAACACAAGC
GTGTCTGGTACTGTGTACACCGATGGGCAACTTGCTGTTTATCAAGTGGA
TAAAGTGCTACTTCCTTGGGATCCTTCGGAGCTAAAGCCTCCGGCGCCGG
CGCCGGCACCGGGAAA
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