CK739948

Overview
NameCK739948
Unique NameCK739948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1379 contig Csv1_Contig1379:222..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739948 vs. ExPASy Swiss-Prot
Match: MLP43_ARATH (MLP-like protein 43 OS=Arabidopsis thaliana GN=MLP43 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.066e-14
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 1
Query:    1 GTVITWTYKHDGVTXXXXXXXXXXXXXXNSTTFKVIEGHLLDKYSSFYVTVQAIPK-GEHSCLARWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAH 288
            G+++ W Y HDG                N  TFKV+EG L+++Y SF  T+Q  PK GE   +A W ++YEK SE+V  P+ ++   +E++K I+ H
Sbjct:   57 GSIVIWKYVHDGKLTVGKNKIEAVDPEKNLITFKVLEGDLMNEYKSFAFTLQVTPKQGESGSIAHWHLEYEKISEEVAHPETLLQFCVEISKEIDEH 153          
BLAST of CK739948 vs. ExPASy Swiss-Prot
Match: MLP34_ARATH (MLP-like protein 34 OS=Arabidopsis thaliana GN=MLP34 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 34/97 (35.05%), Postives = 53/97 (54.64%), Query Frame = 1
Query:    1 GTVITWTYKHDGVTXXXXXXXXXXXXXXNSTTFKVIEGHLLDKYSSFYVTVQAIPK-GEHSCLARWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAH 288
            G+++ W Y HDG                N  TF+VIEG L+ +Y SF +T+Q  PK G    +  W  +YEK +E+V  P+ ++  A+E++K I+ H
Sbjct:  215 GSIVFWNYVHDGEAKVAKERIEAVDPEKNLITFRVIEGDLMKEYKSFVITIQVTPKHGGSGSVVHWHFEYEKINEEVAHPETLLQFAVEVSKEIDEH 311          

HSP 2 Score: 71.2478 bits (173), Expect = 2.548e-12
Identity = 32/97 (32.99%), Postives = 53/97 (54.64%), Query Frame = 1
Query:    1 GTVITWTYKHDGVTXXXXXXXXXXXXXXNSTTFKVIEGHLLDKYSSFYVTVQAIPK-GEHSCLARWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAH 288
            G+++ W Y HDG                N  TF+VIEG L+ +Y SF +T+Q  PK G    +  W ++YEK S++V  P+ ++   +E+++ I+ H
Sbjct:   59 GSIVFWNYVHDGEAKVAKERIEAVEPEKNLITFRVIEGDLMKEYKSFLITIQVTPKHGGPGSIVHWHLEYEKISDEVAHPETLLQFCVEVSQEIDEH 155          
BLAST of CK739948 vs. ExPASy Swiss-Prot
Match: MLP28_ARATH (MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.706e-13
Identity = 34/97 (35.05%), Postives = 53/97 (54.64%), Query Frame = 1
Query:    1 GTVITWTYKHDGVTXXXXXXXXXXXXXXNSTTFKVIEGHLLDKYSSFYVTVQAIPK-GEHSCLARWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAH 288
            G+++ W Y HDG                N  TF+VIEG L+ +Y SF +T+Q  PK G    +  W ++YEK SE+V  P+ ++   +E++K I+ H
Sbjct:   72 GSIVFWNYVHDGEAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHPETLLQFCVEVSKEIDEH 168          

HSP 2 Score: 68.9366 bits (167), Expect = 1.265e-11
Identity = 32/97 (32.99%), Postives = 52/97 (53.61%), Query Frame = 1
Query:    1 GTVITWTYKHDGVTXXXXXXXXXXXXXXNSTTFKVIEGHLLDKYSSFYVTVQAIPK-GEHSCLARWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAH 288
            G+++ W Y HD                 N  TF+VI+G L+ +Y SF +T+Q  PK G    +  W ++YEK SE+V  P+ ++   +E++K I+ H
Sbjct:  234 GSIVFWNYVHDREAKVAKERIEAVEPNKNLITFRVIDGDLMKEYKSFLLTIQVTPKLGGPGSIVHWHLEYEKISEEVAHPETLLQFCVEVSKEIDEH 330          
BLAST of CK739948 vs. ExPASy Swiss-Prot
Match: MLP31_ARATH (MLP-like protein 31 OS=Arabidopsis thaliana GN=MLP31 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.347e-12
Identity = 33/97 (34.02%), Postives = 51/97 (52.58%), Query Frame = 1
Query:    1 GTVITWTYKHDGVTXXXXXXXXXXXXXXNSTTFKVIEGHLLDKYSSFYVTVQAIPK-GEHSCLARWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAH 288
            G+++ W Y HDG                N  TF+VIEG LL +Y SF +T+Q  PK G    +  W ++YEK  + V  P+  ++  +E++K I+ H
Sbjct:   70 GSIVFWNYVHDGEAKVAKERIEAVEPEKNLITFRVIEGDLLKEYKSFVITIQVTPKRGGPGSVVHWHVEYEKIDDKVAHPETFLDFCVEVSKEIDEH 166          
The following BLAST results are available for this feature:
BLAST of CK739948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MLP43_ARATH6.066e-1437.11MLP-like protein 43 OS=Arabidopsis thaliana GN=MLP... [more]
MLP34_ARATH5.135e-1335.05MLP-like protein 34 OS=Arabidopsis thaliana GN=MLP... [more]
MLP28_ARATH6.706e-1335.05MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP... [more]
MLP31_ARATH4.347e-1234.02MLP-like protein 31 OS=Arabidopsis thaliana GN=MLP... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6770 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739948 ID=CK739948; Name=CK739948; organism=Citrus sinensis; type=EST; length=474bp
GGCACTGTCATTACCTGGACTTATAAGCATGATGGGGTTACAGAAATTGC
CAAGGAGATAATTGAAGAAATAGATGACGAAAAGAACTCGACAACTTTTA
AAGTAATTGAAGGGCATCTACTGGACAAGTACAGCAGCTTCTATGTTACC
GTTCAAGCCATTCCGAAGGGTGAACATAGTTGCTTGGCTCGTTGGACTAT
CAAGTATGAGAAGAAGAGCGAGGACGTGCCTGATCCCCAAGGAATTGTAA
ATTTGGCAATCGAAATGACCAAAGGTATCGAAGCCCATCATCCCCCAAAG
CAGGCATAGATCCATGCATTACTGCCTTAGGTTATGTCTGTGTTTGATTT
GGTCATAAATAAAGTGCTTCTCTAGAAGTGCTTGTGTTTGGTATCTGCTT
GGGTGTGTCTTCTTGGTTTGACCACAACTAATTAGCTTGTATTATGAACG
AAATTTGTGCTTGTATTCCTACGT
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