CK739949

Overview
NameCK739949
Unique NameCK739949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:589..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739949 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.977e-14
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 2
Query:    2 DYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 124
            DY++WKS+NRI+PDGVNAKLLGCHGPLA RQPG+AF+ A T
Sbjct:  180 DYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAFINACT 220          
BLAST of CK739949 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.131e-13
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 2
Query:    2 DYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 118
            DYL++KSENRIVPDGVNAKLLGCHG LA RQPGRAFLEA
Sbjct:  109 DYLKYKSENRIVPDGVNAKLLGCHGRLAARQPGRAFLEA 147          
BLAST of CK739949 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.634e-12
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 2
Query:    2 DYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 121
            DYL++KSENRIVPDGVNAKLLG HGPLA RQPGRAFL ++
Sbjct:  180 DYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219          
BLAST of CK739949 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 2
Query:    2 DYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLE 115
            DYL+WK+ENRIVPDGVN KLLGC GPL+ R+PG+AFL+
Sbjct:  180 DYLKWKTENRIVPDGVNPKLLGCRGPLSNRKPGQAFLK 217          
BLAST of CK739949 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 2
Query:    2 DYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 118
            DY R KSENRI+PDGVNAKLLGCHG LA R+PGRAF++A
Sbjct:  180 DYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAFIDA 218          
The following BLAST results are available for this feature:
BLAST of CK739949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL10_VITRI2.977e-1478.0560S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_TOBAC1.131e-1389.7460S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_SOLME1.634e-1282.5060S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_PINTA8.108e-1276.3260S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL10_EUPES1.806e-1179.4960S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6771 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739949 ID=CK739949; Name=CK739949; organism=Citrus sinensis; type=EST; length=493bp
TGATTATCTGCGGTGGAAGTCGGAGAACAGGATTGTCCCAGATGGTGTGA
ATGCCAAGCTTCTCGGATGTCATGGTCCTTTGGCTCAACGTCAACCTGGA
AGAGCTTTCCTGGAAGCAACAACCTAAGATATTTACTGTCTCAAAATAGC
AGAGCTGGGTCTACTGTCTAGTTTATTATTTTCCATTTCGTACCTTTTCT
CAGTTGAACTGGATTTCTCAAGTTGAAGTGACATGTTTCTTTGGTTTAAC
TATGTGATCCTTGCAGTTGTTTTAGTGATTTGCAATTTGCACTCTTCTAT
ATGATTTATATGGTTTATTTATTCACCTTTTCTCCTCTTTGCTGATTGAG
CAACATGGCAAATTTGGTTTGTTGCTATTATCTTAATCACCATGGGTCAT
TCATGTTTAGCTGATTTAGTAAAACTCTGCTGATATATTAAGTGAGAATA
ATCGTGGTTTTAATAAATTGCATTTTGAAAAAAAAAAAAAAAA
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