CK739954

Overview
NameCK739954
Unique NameCK739954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length344
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3639 contig Csv1_Contig3639:600..943. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739954 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.630e-35
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 3 
Query:    9 NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 266
            NRVYVGNL+WGVD  ALETLF EQGKV++AKVVYDR+SGRSRGFGFVTYSSAEEV+NAI+SL+GVDL GRAIRVS AEARP RRQF
Sbjct:  188 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273

HSP 2 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 3 
Query:   12 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQ 263
            +++VGNL +  D  AL  LF   G V   +V+YD+ +GRSRGFGFVT SS EEV+ A    NG +L GRA+RV+ +   P++R+
Sbjct:   88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-SGPPPEKRE 170
[Close]
BLAST of CK739954 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.630e-35
Identity = 73/86 (84.88%), Postives = 80/86 (93.02%), Query Frame = 3 
Query:    9 NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 266
            NRVYVGNL+WGVD  ALETLF EQGKV++AKVVYDR+SGRSRGFGFVTYSSAEEV+NAI+SL+GVDL GRAIRVS AEARP RRQF
Sbjct:  194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279

HSP 2 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 3 
Query:   12 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF*AVAETS 287
            +++VGNL +  D  AL  LF   G V   +V+YD+ +GRSRGFGFVT SS EEV+ A    NG +L GRA+RV+ +   P++R+  +  E S
Sbjct:   88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-SGPPPEKRENSSFRENS 178
[Close]
BLAST of CK739954 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.811e-33
Identity = 67/87 (77.01%), Postives = 78/87 (89.66%), Query Frame = 3 
Query:    6 GNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 266
            GNRVYVGNLSWGVDD+ALE+LF EQGKV+EA+V+YDR+SGRS+GFGFVTY S++EV NAI SL+G DL GR IRVS AEARP RRQ+
Sbjct:  203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289

HSP 2 Score: 77.411 bits (189), Expect = 2.459e-14
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 3 
Query:   12 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 257
            +++VGNL + VD   L  LF   G V   +V+YD+ +GRSRGFGFVT SS  EV+ A    NG +L GR +RV+     P+R
Sbjct:   92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKR 173
[Close]
BLAST of CK739954 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.034e-33
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 3 
Query:    9 NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 266
            NRVYVGNLSWGVDDLAL+ LF EQG V++AKVVYDR+SGRSRGFGFVTYSSA+EV++AIDSLNG+DL GR+IRVS AE RP RRQF
Sbjct:  208 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP-RRQF 292

HSP 2 Score: 80.1073 bits (196), Expect = 3.794e-15
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 3 
Query:   12 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 257
            +++VGNL + VD  AL  LF   G V   +V+YD+ SGRSRGFGFVT S+ EEV+ A    NG ++ GRAIRV+   A  +R
Sbjct:   89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKR 170
[Close]
BLAST of CK739954 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.882e-33
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 3 
Query:    9 NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 266
            NRVYVGNLSWGVDDLAL+ LF EQG V++AKVVYDR+SGRSRGFGFVTYSS++EV++AIDSLNGVDL GR+IRVS AE RP RRQF
Sbjct:  207 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP-RRQF 291

HSP 2 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 3 
Query:   12 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 257
            +++VGNL + VD  AL  LF   G V   +V+YD+ +GRSRGFGFVT S+ EEV+ A    NG ++ GRAIRV+   A  +R
Sbjct:   88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKR 169
[Close]
BLAST of CK739954 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.615e-32
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 3 
Query:    6 GNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 266
            GNR+YVGNLSWGVDD+ALE LF EQGKV+EA+V+YDR+SGRS+GFGFVT SS++EV  AI+SLNG DL GR IRVS AEARP R QF
Sbjct:  256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 342

HSP 2 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 3 
Query:   12 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQ 263
            +++VGNLS+ VD   L  LF   G V   +V+YD+ +GRSRGFGFVT S+A EV+ A    NG +  GR +RV+     P+R +
Sbjct:  100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREE 183
[Close]
BLAST of CK739954 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 56/85 (65.88%), Postives = 68/85 (80.00%), Query Frame = 3 
Query:   12 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 266
            RVYVGNL W VD+  LE LF E GKV+EA+VVYDRE+GRSRGFGFVT S  +E++ AI +L+G +L GRAIRV+VAE RP RR +
Sbjct:  245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRGY 329

HSP 2 Score: 75.485 bits (184), Expect = 9.344e-14
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 3 
Query:   12 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 257
            +++VGNL++ V+  AL  LF + G V  A+V+Y+RE+ +SRGFGFVT SS +E + A++  N  DL GR + V+ A  R  R
Sbjct:  151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR 232
[Close]
BLAST of CK739954 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.301e-23
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 3 
Query:   12 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 266
            R+YVGN+ WG+DD  LE LF E GKV+ A+VVYDRE+GRSRGFGFVT +S  E+ +AI +L+G  L GR IRV+VAE R +R  F
Sbjct:  231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRNTF 315

HSP 2 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 3 
Query:   12 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 257
            +++VGNL + VD   L  LF + G V  A+V+Y+R++ +SRGFGFVT S+ EE + A++  N  D+ GR + V+ A  R +R
Sbjct:  137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGER 218
[Close]
BLAST of CK739954 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.456e-23
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 3 
Query:   12 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 257
            RVYVGNL W VD   LE LF E GKV+ A+VV DRE+GRSRGFGFVT SS  EV++AI +L+G  L GRA+RV+VAE RP+R
Sbjct:  150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRR 231

HSP 2 Score: 74.7146 bits (182), Expect = 1.594e-13
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 3 
Query:   12 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR--PQR 257
            +++VGNL + VD   L  +F   G V  A+V+Y+RE+ RSRGFGFVT S+ EE + A++ LNG D+ GR + V+ A  R  P+R
Sbjct:   56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER 139
[Close]
BLAST of CK739954 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.101e-22
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 3 
Query:   12 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 266
            R+YVGN+ W +DD  LE +F E GKV+ A+VV+DRESGRSRGFGFVT SS  E+  AI +L+G  L GR IRV+ AE RP+R  +
Sbjct:  192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNTY 276

HSP 2 Score: 74.3294 bits (181), Expect = 2.082e-13
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 3 
Query:   12 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 257
            +++VGNL + +D   L  LF++ G V  A+V+Y+RE+ RSRGFGFVT S+ EE D A++  +  DL GR + V+ A  R  R
Sbjct:   98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSR 179
The following BLAST results are available for this feature:
BLAST of CK739954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
ROC1_NICSY5.630e-3584.8829 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL5.630e-3584.8830 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_ARATH1.811e-3377.01Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC2_NICPL4.034e-3381.4031 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICSY6.882e-3381.4029 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_ARATH2.615e-3275.8629 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC3_ARATH4.044e-2565.8831 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC4_NICSY1.301e-2361.1831 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL6.456e-2365.8528 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC3_NICSY1.101e-2258.8228 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6776 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739954 ID=CK739954; Name=CK739954; organism=Citrus sinensis; type=EST; length=344bp
GTGGTGGCAACCGTGTTTATGTTGGTAACCTTTCATGGGGTGTTGATGAT
TTAGCTCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTGGAAGCCAA
AGTGGTATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGGGTTTGTGA
CTTACAGTTCTGCTGAAGAGGTTGACAATGCAATTGATTCCTTGAATGGT
GTAGATTTGGCCGGTAGAGCAATTCGAGTCTCGGTGGCTGAAGCAAGGCC
ACAAAGGCGTCAATTTTGAGCTGTGGCAGAAACTAGTTTTCAGTTGTTTT
GATTTTATCGTTAGTTATTTGTGTTGTTATAAGGCTGCTTATCA
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