CK739959

Overview
NameCK739959
Unique NameCK739959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:834..1347. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739959 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.510e-14
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 3 
Query:    3 YSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 140
            YSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  296 YSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341
[Close]
BLAST of CK739959 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.772e-12
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 3 
Query:    3 YSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 116
            YSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  407 YSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444
[Close]
BLAST of CK739959 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.315e-12
Identity = 25/45 (55.56%), Postives = 37/45 (82.22%), Query Frame = 3 
Query:    3 YSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 137
            YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  415 YSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459
The following BLAST results are available for this feature:
BLAST of CK739959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CYSPL_SOLLC5.510e-1471.74Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYA_ORYSJ1.772e-1276.32Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH2.315e-1255.56Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6781 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739959 ID=CK739959; Name=CK739959; organism=Citrus sinensis; type=EST; length=514bp
ACTATAGCTGCTGCCCACATGACTATCCCATCTGTAATGTTCGTGCTGGG
ACCTGCTTGATGAGCAAGGACAACCCATTGGGAGTGAGGGCATTACGACG
CACCCCTGCTAAACCTTACTGGGCTCATGGAAATCAAGGTGGAAGTAGCA
GTGCTTAATTATAGTTGGCACTGTAAGAGCAGTGGAAGGCCGAAGGGAGG
ATGAAAATATTCGTGCTTGTGAATGAGTTTCTCCCCGGCCTTAGTTCATT
CTACTGCATTTCATTCCAAACGTTAATGTACCGGCAGGTGGATGGTCTGT
TAAATATTTATTCGGACGTTGGTTTGGTATATAGCGTTGTAAGTTATCTA
TCTGCGTTGAATCTGAACAATGCACAAACAAATTGTTGGTATCTATTTCC
AATGTCCTCTACCAAATCCCTGGCGTCATTCAGCGGAGGCTTTTATGAAT
TGATATTTAACGATTCTTCTTGAATCACGAACATTTGAATTACGCAAAAA
AAAAAAAAAAAAAA
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