CK739964

Overview
NameCK739964
Unique NameCK739964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length204
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10990 contig Csv1_Contig10990:1081..1284. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.818e-31
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEVTDP+YPGG
Sbjct:  133 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGG 195          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.818e-31
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEVTDP+YPGG
Sbjct:  139 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGG 201          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.513e-31
Identity = 59/63 (93.65%), Postives = 63/63 (100.00%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGA+EGYR+AGGPLGEVTDPLYPGG
Sbjct:  132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGG 194          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.513e-31
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGG
Sbjct:   71 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGG 133          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.513e-31
Identity = 60/63 (95.24%), Postives = 63/63 (100.00%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGG
Sbjct:  120 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGG 182          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.111e-30
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGG
Sbjct:  132 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGG 194          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.111e-30
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 192          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.111e-30
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  127 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 189          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.451e-30
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 194          
BLAST of CK739964 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.451e-30
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1
Query:   16 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 204
            WFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:  130 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 192          
The following BLAST results are available for this feature:
BLAST of CK739964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB2_PHYPA3.818e-3195.24Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_PINSY3.818e-3195.24Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB27_TOBAC6.513e-3193.65Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_CUCSA6.513e-3195.24Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA6.513e-3195.24Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_PETSP1.111e-3095.24Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_MAIZE1.111e-3096.83Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_MAIZE1.111e-3096.83Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2G_SOLLC1.451e-3095.24Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC1.451e-3095.24Chlorophyll a-b binding protein 1B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6786 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739964 ID=CK739964; Name=CK739964; organism=Citrus sinensis; type=EST; length=204bp
AGAAGAGAGAACTAGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGG
CGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCT
TGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTAC
AGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGG
TGGC
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