CK739966

Overview
NameCK739966
Unique NameCK739966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length255
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739966 vs. ExPASy Swiss-Prot
Match: SYE_ARATH (Glutamyl-tRNA synthetase OS=Arabidopsis thaliana GN=At5g64050 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.439e-33
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 1
Query:    1 VNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTL 252
            VNKSGAIFDSTKLRWMNGQHLRA+P+ +LTKL+GERWKS GILTES+G FV+EA++LLKDGI+LV DSDK L NLLSYPL  TL
Sbjct:  356 VNKSGAIFDSTKLRWMNGQHLRALPNEKLTKLVGERWKSAGILTESEGSFVNEAVELLKDGIELVTDSDKVLLNLLSYPLHATL 439          
BLAST of CK739966 vs. ExPASy Swiss-Prot
Match: SYE_TOBAC (Glutamyl-tRNA synthetase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.894e-31
Identity = 62/84 (73.81%), Postives = 74/84 (88.10%), Query Frame = 1
Query:    1 VNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTL 252
            VNKSGAIFDSTKLRWMNGQHLR++PS EL ++IGERWK  GI TES+G F+ +A+ LLKDGIDL+ DS+KALS+LLSYPL +TL
Sbjct:  358 VNKSGAIFDSTKLRWMNGQHLRSLPSEELNRIIGERWKDAGIATESQGIFIQDAVLLLKDGIDLITDSEKALSSLLSYPLYETL 441          
BLAST of CK739966 vs. ExPASy Swiss-Prot
Match: SYE_HORVU (Glutamyl-tRNA synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.445e-25
Identity = 53/85 (62.35%), Postives = 69/85 (81.18%), Query Frame = 1
Query:    1 VNKSGAIFDSTKLRWMNGQHLRAIPSNELTKLIGERWKSTGILTESKGPFVDEAIQLLKDGIDLVPDSDKALSNLLSYPLRDTLT 255
            VNKSGA+FD+TKL+WMNGQHLR++PS+ L K   ++W+STGIL ES+  F  EA +LLK+GIDL+ D+D AL  LLSYPL +TL+
Sbjct:  346 VNKSGAVFDATKLKWMNGQHLRSLPSDLLIKDFEDQWRSTGILLESESGFAKEAAELLKEGIDLITDADAALCKLLSYPLHETLS 430          
The following BLAST results are available for this feature:
BLAST of CK739966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYE_ARATH2.439e-3379.76Glutamyl-tRNA synthetase OS=Arabidopsis thaliana G... [more]
SYE_TOBAC3.894e-3173.81Glutamyl-tRNA synthetase OS=Nicotiana tabacum PE=2... [more]
SYE_HORVU2.445e-2562.35Glutamyl-tRNA synthetase OS=Hordeum vulgare PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6788 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739966 ID=CK739966; Name=CK739966; organism=Citrus sinensis; type=EST; length=255bp
GTTAACAAAAGCGGAGCCATTTTTGATTCTACTAAGTTAAGGTGGATGAA
TGGTCAGCATTTGAGGGCAATTCCTTCAAACGAGTTGACCAAATTGATTG
GTGAACGCTGGAAGAGCACTGGTATCCTCACAGAATCAAAAGGGCCGTTT
GTAGATGAGGCAATTCAGCTGCTCAAGGATGGGATTGACTTGGTACCAGA
CTCAGATAAAGCACTTTCAAACTTGCTGTCTTATCCTTTACGTGATACTT
TGACC
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