CK739967

Overview
NameCK739967
Unique NameCK739967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10777 contig Csv1_Contig10777:17..402. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.768e-52
Identity = 94/108 (87.04%), Postives = 102/108 (94.44%), Query Frame = 2
Query:   62 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            MAT +TVKDVSPHEFVKAY+AHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLR GLGVG+FRRIYGGSKRNGSRPPHFCKSSG +ARHILQQL
Sbjct:    1 MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQL 108          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.940e-52
Identity = 93/108 (86.11%), Postives = 102/108 (94.44%), Query Frame = 2
Query:   62 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            MAT +TVKDVSPH+FVKAY++HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLR GLGVG+FRRIYGGSKRNGSRPPHFCKSSG IARHILQQL
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQL 108          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.145e-52
Identity = 94/108 (87.04%), Postives = 102/108 (94.44%), Query Frame = 2
Query:   62 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            MAT +TVKDVSPH+FVKAY++HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARKIYLR GLGVG+FRRIYGGSKRNGSRPPHFCKSSG IARHILQQL
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQL 108          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.162e-50
Identity = 91/107 (85.05%), Postives = 101/107 (94.39%), Query Frame = 2
Query:   65 ATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            +TARTVKDV+PHEFVKAYSAHLKRSGKMELP W DIVKTA+FKEL PYDPDWYY RAAS+ARKIYLRQG+GVG F++IYGG +RNGSRPPHFCKSSGAI+R+ILQQL
Sbjct:    4 STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQL 110          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.351e-35
Identity = 61/103 (59.22%), Postives = 84/103 (81.55%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            +VKDVS HEF +A++A LK+SGKM++P WTD VKT  FKEL+PY+PDWY++RAAS+ R +Y+R   G+GSF +IYGG +R G+ P HFCK++G+I+R +LQ L
Sbjct:    4 SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSL 106          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_BRABE (40S ribosomal protein S19 OS=Branchiostoma belcheri GN=RPS19 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.834e-31
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TVKDV+  EFVKA++A LK+SGK++LP W D+VKTA  KELAPYDPDW+Y+RAAS AR +Y+R G+GVG+  +IYGG KR G++P  F   S  ++R +LQ L
Sbjct:    6 TVKDVNQQEFVKAFAAFLKKSGKLKLPEWVDLVKTAPHKELAPYDPDWFYLRAASTARHLYMRGGVGVGAMCKIYGGRKRRGTKPAKFRVCSRGVSRTVLQSL 108          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_RAT (40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 8.541e-31
Identity = 61/103 (59.22%), Postives = 78/103 (75.73%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A+ KELAPYD +W+Y RAAS AR +YLR G GVGS  +IYGG +RNG RP HF + S ++AR +LQ L
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQAL 107          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_MOUSE (40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 8.541e-31
Identity = 61/103 (59.22%), Postives = 78/103 (75.73%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A+ KELAPYD +W+Y RAAS AR +YLR G GVGS  +IYGG +RNG RP HF + S ++AR +LQ L
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQAL 107          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_AEQIR (40S ribosomal protein S19 OS=Aequipecten irradians GN=RPS19 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.485e-30
Identity = 56/103 (54.37%), Postives = 77/103 (74.76%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            +VKDV  H F KA +A LK+SGKM++P W  I+K ++F EL+PYD DW+Y RAAS+ R +Y+R   GVG+  +IYG  KRNG+ P H+C+SSG++AR +LQ L
Sbjct:    4 SVKDVDSHTFTKALAAFLKKSGKMKIPEWATIIKLSKFNELSPYDEDWFYTRAASICRHLYIRSPAGVGALTKIYGDRKRNGTVPSHYCRSSGSVARRVLQAL 106          
BLAST of CK739967 vs. ExPASy Swiss-Prot
Match: RS19_PONAB (40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 4.239e-30
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 2
Query:   77 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 385
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A+ KELAPYD +W+Y RAAS AR +YLR G GVGS  +IYGG +RNG  P HF + S ++AR +LQ L
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQAL 107          
The following BLAST results are available for this feature:
BLAST of CK739967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS193_ARATH1.768e-5287.0440S ribosomal protein S19-3 OS=Arabidopsis thalian... [more]
RS191_ARATH3.940e-5286.1140S ribosomal protein S19-1 OS=Arabidopsis thalian... [more]
RS192_ARATH5.145e-5287.0440S ribosomal protein S19-2 OS=Arabidopsis thalian... [more]
RS19_ORYSJ2.162e-5085.0540S ribosomal protein S19 OS=Oryza sativa subsp. j... [more]
RS19_MYAAR3.351e-3559.2240S ribosomal protein S19 OS=Mya arenaria GN=RPS19... [more]
RS19_BRABE3.834e-3159.2240S ribosomal protein S19 OS=Branchiostoma belcher... [more]
RS19_RAT8.541e-3159.2240S ribosomal protein S19 OS=Rattus norvegicus GN=... [more]
RS19_MOUSE8.541e-3159.2240S ribosomal protein S19 OS=Mus musculus GN=Rps19... [more]
RS19_AEQIR2.485e-3054.3740S ribosomal protein S19 OS=Aequipecten irradians... [more]
RS19_PONAB4.239e-3058.2540S ribosomal protein S19 OS=Pongo abelii GN=RPS19... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6789 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739967 ID=CK739967; Name=CK739967; organism=Citrus sinensis; type=EST; length=386bp
CAATTCCACCACCTTCTTGCAAAAGCGAAGCTTTGAGTCGCTGTCCTGCT
CTGTTGTGACCATGGCTACCGCTAGGACTGTCAAAGATGTGTCTCCTCAT
GAGTTTGTGAAGGCTTACTCTGCTCATCTCAAGCGATCTGGCAAGATGGA
ACTTCCCCCATGGACTGACATAGTCAAGACTGCCCAGTTCAAGGAGCTTG
CTCCCTATGACCCTGACTGGTACTATGTCAGAGCTGCCTCCATGGCAAGG
AAAATCTACTTGAGGCAAGGGCTTGGTGTGGGTTCTTTCAGGAGGATTTA
TGGTGGAAGTAAGAGGAATGGAAGTCGTCCACCTCACTTCTGCAAAAGCA
GTGGTGCTATTGCTCGCCACATTCTTCAACAGTTGC
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