CK739972

Overview
NameCK739972
Unique NameCK739972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length233
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11002 contig Csv1_Contig11002:355..587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK739972 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.321e-39
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 1 
Query:    1 FLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 231
            FLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQ
Sbjct:   92 FLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQ 168
[Close]
BLAST of CK739972 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.844e-39
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 1 
Query:    1 FLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 231
            FLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQ
Sbjct:   92 FLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQ 168
[Close]
BLAST of CK739972 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.564e-39
Identity = 70/77 (90.91%), Postives = 76/77 (98.70%), Query Frame = 1 
Query:    1 FLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 231
            FLKWYREAELIHGRWAM AV+GIFVGQAW+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQ
Sbjct:   97 FLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQ 173
The following BLAST results are available for this feature:
BLAST of CK739972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CB4A_SOLLC1.321e-3993.51Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC3.844e-3994.81Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL8.564e-3990.91Chlorophyll a-b binding protein CP24, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6794 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739972 ID=CK739972; Name=CK739972; organism=Citrus sinensis; type=EST; length=233bp
TTCCTGAAATGGTACAGAGAAGCAGAACTGATCCACGGACGATGGGCAAT
GGCTGCAGTTGTTGGGATATTCGTCGGACAGGCGTGGAGTGGGATTCCAT
GGTTCGAGGCTGGAGCAGATCCTGGAGCCATAGCACCCTTCTCCTTCGGC
TCACTCCTGGGAACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGCAAGCG
GTGGGTTGATTTTTTCAATCCTGAATCTCAATC
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