CK739976

Overview
NameCK739976
Unique NameCK739976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10697 contig Csv1_Contig10697:212..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739976 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.876e-33
Identity = 62/132 (46.97%), Postives = 87/132 (65.91%), Query Frame = 2
Query:    8 VPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNVEARAEAYLKEMVFPNTSNSISVLKCCEGLLPLSEEISLVNRLINAIANNACKEQLTSGL*S*TIPSQQKLHKILSQKHLRIGGE 403
            +PGGAE FELAAKFCYGIN E+T SNVA + CV+ +LEMTE++++ N+ +R E YL+ +V  N    + VLK  E LLPL++E++++ R I+AIA+ AC EQ+ S        S  +LH     K    GG+
Sbjct:   88 LPGGAETFELAAKFCYGINFEITSSNVAQLFCVSDYLEMTEEYSKDNLASRTEEYLESIVCKNLEMCVQVLKQSEILLPLADELNIIGRCIDAIASKACAEQIASSFSRLEYSSSGRLHMSRQVKSSGDGGD 219          

HSP 2 Score: 38.1206 bits (87), Expect = 8.876e-33
Identity = 14/27 (51.85%), Postives = 22/27 (81.48%), Query Frame = 1
Query:  391 DWWGKSLAVLNLDFFQRVLSAVKSRGL 471
            DWW + L+VL +D +QRV++A+K RG+
Sbjct:  219 DWWIEDLSVLRIDLYQRVMNAMKCRGV 245          
BLAST of CK739976 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.018e-28
Identity = 45/105 (42.86%), Postives = 69/105 (65.71%), Query Frame = 2
Query:    2 SAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNVEARAEAYLKEMVFPNTSNSISVLKCCEGLLPLSEEISLVNRLINAIANNACKEQL 316
            S +PGG E FE AAKFCYG+N E+T+ NVA + C A FL+MT+ + + N+  R + +L ++   + S +I VLK CE LLP+S ++ +V R ++ +   AC E +
Sbjct:   75 SDIPGGPEIFEKAAKFCYGVNFEITVQNVAALHCAAEFLQMTDKYCDNNLAGRTQDFLSQVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVDVVGAKACNEAM 179          

HSP 2 Score: 39.2762 bits (90), Expect = 2.018e-28
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 1
Query:  382 TPSDWWGKSLAVLNLDFFQRVLSAVKSRGL 471
            TP +WW + L +L++DFF  V+S++K RG+
Sbjct:  184 TPPNWWTEELCILDVDFFSDVVSSMKQRGV 213          
BLAST of CK739976 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.160e-27
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 2
Query:    8 VPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNVEARAEAYLKEMVFPNTSNSISVLKCCEGLLPLSEEISLVNRLINAIANNAC 304
            +PGG EAFELA+KFCYG+ V+LT +N++ +RC A +LEMTED  E N+  + EA+L  +V  +  +SI VLK CE L P +E + +V R   +IA  AC
Sbjct:   98 LPGGPEAFELASKFCYGVPVDLTATNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIAWKAC 196          

HSP 2 Score: 40.0466 bits (92), Expect = 2.160e-27
Identity = 16/51 (31.37%), Postives = 30/51 (58.82%), Query Frame = 1
Query:  322 WLVKLDHTFPAKTAQNIEPE-TPSDWWGKSLAVLNLDFFQRVLSAVKSRGL 471
            W    D +F    ++N   +  P DWW + +++L +D F RV++A+K +G+
Sbjct:  225 WNESKDSSFYCSPSRNTNSQPVPPDWWFEDVSILRIDHFVRVITAIKVKGM 275          
BLAST of CK739976 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.920e-21
Identity = 40/100 (40.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:    2 SAVPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNVEARAEAYLKEMVFPNTSNSISVLKCCEGLLPLSEEISLVNRLINAIANNA 301
            S +PGG + FEL AKFCYG+ +ELT SNV  +RC A  LEMTE+  E N+ ++ E +  ++V  +  +SI  L  C+ +L  ++E+++  + I ++A  A
Sbjct:   73 SDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEHGEGNLISQTETFFNQVVLKSWKDSIKALHSCDEVLEYADELNITKKCIESLAMRA 172          

HSP 2 Score: 33.113 bits (74), Expect = 1.920e-21
Identity = 11/30 (36.67%), Postives = 22/30 (73.33%), Query Frame = 1
Query:  382 TPSDWWGKSLAVLNLDFFQRVLSAVKSRGL 471
            T SDWW +  ++L+   F+R+++ ++SRG+
Sbjct:  211 TSSDWWYEDASMLSFPLFKRLITVMESRGI 240          
BLAST of CK739976 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.571e-19
Identity = 46/99 (46.46%), Postives = 68/99 (68.69%), Query Frame = 2
Query:    8 VPGGAEAFELAAKFCYGINVELTLSNVATIRCVAHFLEMTEDFAEKNVEARAEAYLKEMVFPNTSNSISVLKCCEGLLPLSEEISLVNRLINAIANNAC 304
            +PGGA +FELAA+F YG+ V+LT +N++ +RC A +LEMTE+  E N+  + EA+L  +V  +  +SI+VLK CE L P +E + +V R   +IA  AC
Sbjct:  105 LPGGAGSFELAARFSYGMAVDLTAANISGLRCAAEYLEMTEEMEEGNLIFKTEAFLSYVVLSSWRDSIAVLKSCEALSPWAENLQIVRRCSESIAWKAC 203          
The following BLAST results are available for this feature:
BLAST of CK739976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y5880_ARATH8.876e-3346.97BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
RPT2_ARATH2.018e-2842.86Root phototropism protein 2 OS=Arabidopsis thalian... [more]
RPT3_ARATH2.160e-2749.49Root phototropism protein 3 OS=Arabidopsis thalian... [more]
Y1044_ARATH1.920e-2140.00BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
NPH3_ORYSJ1.571e-1946.46Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6798 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739976 ID=CK739976; Name=CK739976; organism=Citrus sinensis; type=EST; length=522bp
CTCAGCTGTTCCGGGCGGAGCAGAGGCATTCGAGCTTGCTGCGAAGTTCT
GCTATGGAATAAATGTCGAGCTTACACTGTCAAATGTTGCAACGATACGC
TGTGTAGCCCATTTCCTTGAAATGACAGAAGACTTCGCGGAGAAAAACGT
AGAGGCTCGAGCTGAAGCTTATCTAAAGGAGATGGTGTTCCCTAATACAT
CAAACTCAATATCCGTTCTCAAATGTTGTGAAGGCCTCTTGCCTCTGTCT
GAAGAGATTAGCCTAGTTAACAGGCTTATCAATGCAATTGCAAATAATGC
TTGCAAAGAGCAGCTCACCTCTGGCTTGTAAAGCTAGACCATACCTTCCC
AGCAAAAACTGCACAAAATATTGAGCCAGAAACACCTTCGGATTGGTGGG
GAAAGTCTCTTGCAGTGCTAAATCTTGATTTCTTCCAACGAGTTCTATCT
GCTGTAAAATCAAGGGGTCTAAACAGGACATGATCAGCAAATTTTGATAA
ACTATGCACATAATTCTCTTCC
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