CK739985

Overview
NameCK739985
Unique NameCK739985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2009 contig Csv1_Contig2009:23..412. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739985 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.601e-37
Identity = 78/109 (71.56%), Postives = 87/109 (79.82%), Query Frame = 2
Query:   62 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERR 388
            MDFR+MGL+S PLF TLQHMM+M  D + DNK+ NAPT +YVRDAKAMA TPADVKEYPNSYVF +DMPGLKSGDIKVQVEDDN+LLI            AKY+RMERR
Sbjct:    1 MDFRVMGLES-PLFHTLQHMMDMSEDGAGDNKTHNAPTWSYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERR 108          
BLAST of CK739985 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.711e-35
Identity = 72/109 (66.06%), Postives = 84/109 (77.06%), Query Frame = 2
Query:   62 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERR 388
            MD R++G+D++PLF TL HMME   +DS      NAP++ YVRDAKAMA TPADVKEYPNSYVF+VDMPGLKSGDIKVQVE+DNVLLIS           AK++RMERR
Sbjct:    1 MDLRLLGIDNTPLFHTLHHMMEAAGEDSV-----NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERR 104          
BLAST of CK739985 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.514e-31
Identity = 69/104 (66.35%), Postives = 80/104 (76.92%), Query Frame = 2
Query:   77 MGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERR 388
            M LDS PLF+TL H+M++   D    K+ NAPTRTYVRDAKAMA TPADVKE+PNSYVF+VDMPG+KSGDIKVQVED+NVLLIS            KY++MERR
Sbjct:    1 MDLDS-PLFNTLHHIMDL--TDDTTEKNLNAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERR 101          
BLAST of CK739985 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.741e-28
Identity = 69/110 (62.73%), Postives = 78/110 (70.91%), Query Frame = 2
Query:   62 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLIS-XXXXXXXXXXXAKYVRMERR 388
            MD R+MG D  PLF    H+M+   DD + N S  AP+RT++ DAKAMA TPADVKEYPNSYVFI+DMPGLKSGDIKVQV+ DNVL IS            AKYVRMERR
Sbjct:    1 MDLRLMGFDH-PLF---HHIMDYAGDDKSSNSS--APSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERR 104          
BLAST of CK739985 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.961e-27
Identity = 66/106 (62.26%), Postives = 76/106 (71.70%), Query Frame = 2
Query:   74 IMGLDSSPLFSTLQHMMEMGADDSADNKSFNA-PTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERR 388
            +MG D  PL   L +++E   D++  NKS N+ P+R YVRDA+AMA TPADVKE PNSYVFIVDMPGLKSGDIKVQVE DNVL+IS            KYVRMERR
Sbjct:    6 LMGFD--PLLRNLHYILEATDDNTTGNKSNNSGPSRAYVRDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERR 109          
BLAST of CK739985 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.462e-24
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 2
Query:   62 MDFRIMGLDSSPLFSTLQHMMEMGADDSA---DNK--SFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERR 388
            MD  + GL++ PL + LQH++++   D+    DNK  S  + TRTYVRDA+AMA TPADVKE P +Y F+VDMPGL +GDI+VQVED+ VL++S           AKY+RMERR
Sbjct:    1 MDAVMFGLET-PLMAALQHLLDVPDGDAGAGGDNKTGSGGSATRTYVRDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERR 113          
BLAST of CK739985 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.905e-24
Identity = 63/116 (54.31%), Postives = 73/116 (62.93%), Query Frame = 2
Query:   62 MDFRIMGLDS----SPLFSTLQHMMEMGAD-DSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLIS--XXXXXXXXXXXAKYVRMERR 388
            MD R  GL +      L ST+Q M++   D D A       P R YVRDAKAMA TPADVKEYPNSYVFI DMPG+K+ +IKVQVEDDNVL++S              KY+RMERR
Sbjct:    1 MDLRNFGLSNFGLEPQLLSTIQDMLDFADDHDRAGRAPPEQPIRAYVRDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERR 116          
BLAST of CK739985 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.931e-23
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = 2
Query:   62 MDFRIMGLDSSPLFSTLQHMMEMGADDSA---DNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERR 388
            MD R+ GL++ PL   LQH++++   D+    D      PTRTYV DA+AMA TPADVKE P +Y F+VDMPGL +GDIKVQVED+ VL+IS           AKY+RMERR
Sbjct:    1 MDGRMFGLET-PLMVALQHLLDVPDGDAGAGGDKAGGGGPTRTYVADARAMAVTPADVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVIS-GERRREEREDAKYLRMERR 110          
BLAST of CK739985 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.481e-22
Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 2
Query:   77 MGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLIS-XXXXXXXXXXXAKYVRMERR 388
            M L   P+ S L+ M+E+  +D  + K+ N P+R Y+RDAKAMA TPADV E+PN+Y F+VDMPG+K  +IKVQVE+DNVL++S             KYVRMERR
Sbjct:    1 MDLGRFPIISILEDMLEV-PEDHNNEKTRNNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERR 104          
BLAST of CK739985 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.743e-21
Identity = 56/109 (51.38%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   62 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAMAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERR 388
            MD R+ GL++ P  + L H++++   D A   +    TRTYVRDA+AMA TPADVKE   +Y F+VDMPGL +GDI+VQVED+ VL+IS           AKY+RMERR
Sbjct:    1 MDARMFGLET-PRVAALHHLLDVPDGDKAGGGA----TRTYVRDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVIS-GERRREEREDAKYLRMERR 103          
The following BLAST results are available for this feature:
BLAST of CK739985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HSP21_SOYBN1.601e-3771.5617.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_SOLPE9.711e-3566.0617.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_PEA6.514e-3166.3517.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_IPONI6.741e-2862.7317.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_HELAN1.961e-2762.2617.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP22_MAIZE3.462e-2452.6317.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP22_IPONI5.905e-2454.3118.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_MAIZE2.931e-2353.5717.5 kDa class II heat shock protein OS=Zea mays P... [more]
HS176_ARATH2.481e-2252.3817.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP23_MAIZE2.743e-2151.3817.0 kDa class II heat shock protein OS=Zea mays G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6479 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739985 ID=CK739985; Name=CK739985; organism=Citrus sinensis; type=EST; length=390bp
GAACGAACGAATCCTCATTTAGCAGTAGCGAACATCAACAACAGCTAATA
CTCGCAAAAGAATGGATTTCAGAATCATGGGTTTGGACTCATCGCCACTC
TTTTCAACTCTGCAGCACATGATGGAGATGGGGGCGGACGACTCCGCTGA
CAACAAGTCATTCAACGCGCCGACGCGCACGTACGTGAGAGACGCCAAGG
CAATGGCGGGGACGCCTGCGGACGTAAAGGAGTATCCGAACTCGTACGTG
TTCATCGTCGACATGCCCGGACTGAAGTCGGGGGACATCAAGGTCCAAGT
GGAGGACGACAATGTGCTGCTCATAAGCGGAGAGAGGAAGCGGGAGGAGG
AGAAAGAGGGGGCCAAGTATGTGAGAATGGAGAGGAGGGT
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