CK739986

Overview
NameCK739986
Unique NameCK739986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5605 contig Csv1_Contig5605:25..494. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739986 vs. ExPASy Swiss-Prot
Match: COX12_SCHPO (Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe GN=cox12 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 4.922e-21
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 3
Query:   39 AADEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 272
            A  +    T   D RFP TNQT+HCF  YI++ RC+ AKGE+   C++F   Y+SLCP +W+E+W+EQRENGTFP P+
Sbjct:    9 APKQFTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFPAPI 86          
BLAST of CK739986 vs. ExPASy Swiss-Prot
Match: CX6B1_PONAB (Cytochrome c oxidase subunit 6B1 OS=Pongo abelii GN=COX6B1 PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 3.900e-18
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   60 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 272
            KTAP D RFP  NQTR+C+  Y++FHRC   + AKG + + CE + + Y+SLCP  W+  W+EQR  GTFPG +
Sbjct:   13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI 86          
BLAST of CK739986 vs. ExPASy Swiss-Prot
Match: CX6B1_HUMAN (Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 3.900e-18
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   60 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 272
            KTAP D RFP  NQTR+C+  Y++FHRC   + AKG + + CE + + Y+SLCP  W+  W+EQR  GTFPG +
Sbjct:   13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI 86          
BLAST of CK739986 vs. ExPASy Swiss-Prot
Match: CX6B1_MACMU (Cytochrome c oxidase subunit 6B1 OS=Macaca mulatta GN=COX6B1 PE=3 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 6.652e-18
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 3
Query:   36 MAADEIELK-----TAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 272
            MA ++IE K     TAP D RFP  NQTR+C+  Y++FHRC   +  KG   + CE + + Y+SLCP  W+  W+EQR  GTFPG +
Sbjct:    1 MAEEDIETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI 87          
BLAST of CK739986 vs. ExPASy Swiss-Prot
Match: CX6B1_MACFA (Cytochrome c oxidase subunit 6B1 OS=Macaca fascicularis GN=COX6B1 PE=3 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 6.652e-18
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 3
Query:   36 MAADEIELK-----TAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 272
            MA ++IE K     TAP D RFP  NQTR+C+  Y++FHRC   +  KG   + CE + + Y+SLCP  W+  W+EQR  GTFPG +
Sbjct:    1 MAEEDIETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI 87          
BLAST of CK739986 vs. ExPASy Swiss-Prot
Match: COX12_YEAST (Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae GN=COX12 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.936e-17
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   57 LKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 272
            L T   D RFP  NQT+HC+  Y+++H+C+  KGE+   C+ F K Y +LCP DWIEKW++QRE G F G +
Sbjct:    9 LHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWDDQREKGIFAGDI 80          
BLAST of CK739986 vs. ExPASy Swiss-Prot
Match: CX6B1_TARSY (Cytochrome c oxidase subunit 6B1 OS=Tarsius syrichta GN=COX6B1 PE=3 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.528e-17
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   60 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 272
            KTAP D RFP  NQTR+C+  Y++FHRC   + AKG + + CE + + Y+SLCP  W+  W+++R  GTFPG +
Sbjct:   13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI 86          
BLAST of CK739986 vs. ExPASy Swiss-Prot
Match: CX6B1_BOVIN (Cytochrome c oxidase subunit 6B1 OS=Bos taurus GN=COX6B1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 5.632e-17
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 3
Query:   42 ADEIELK-----TAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 272
            A++I+ K     TAP D RFP  NQTR+C+  Y++FHRC   + AKG + + CE + + Y+SLCP  W+  W+++R  GTFPG +
Sbjct:    2 AEDIQAKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI 86          
BLAST of CK739986 vs. ExPASy Swiss-Prot
Match: CX6B1_MOUSE (Cytochrome c oxidase subunit 6B1 OS=Mus musculus GN=Cox6b1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.650e-16
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 3
Query:   60 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 272
            KTAP D RFP  NQT++C+  Y++FHRC   + AKG + + CE + + Y+SLCP  W+  W+++   GTFPG +
Sbjct:   13 KTAPFDSRFPNQNQTKNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPVSWVSAWDDRIAEGTFPGKI 86          
BLAST of CK739986 vs. ExPASy Swiss-Prot
Match: CX6B2_MOUSE (Cytochrome c oxidase subunit 6B2 OS=Mus musculus GN=Cox6b2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.366e-15
Identity = 31/73 (42.47%), Postives = 49/73 (67.12%), Query Frame = 3
Query:   63 TAPADFRFPTTNQTRHCFTRYIEFHRCLAA---KGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 272
            T P D RFP  NQTR+C+  ++++HRC+     +G+ +  CE + + + SLCP  W+++WNEQ + GTFPG +
Sbjct:   16 TPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMNRRGKSTQPCEYYFRVFHSLCPISWVQRWNEQIKQGTFPGKI 88          
The following BLAST results are available for this feature:
BLAST of CK739986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COX12_SCHPO4.922e-2152.56Cytochrome c oxidase subunit 6B OS=Schizosaccharom... [more]
CX6B1_PONAB3.900e-1851.35Cytochrome c oxidase subunit 6B1 OS=Pongo abelii G... [more]
CX6B1_HUMAN3.900e-1851.35Cytochrome c oxidase subunit 6B1 OS=Homo sapiens G... [more]
CX6B1_MACMU6.652e-1847.13Cytochrome c oxidase subunit 6B1 OS=Macaca mulatta... [more]
CX6B1_MACFA6.652e-1847.13Cytochrome c oxidase subunit 6B1 OS=Macaca fascicu... [more]
COX12_YEAST1.936e-1750.00Cytochrome c oxidase subunit 6B OS=Saccharomyces c... [more]
CX6B1_TARSY2.528e-1748.65Cytochrome c oxidase subunit 6B1 OS=Tarsius syrich... [more]
CX6B1_BOVIN5.632e-1744.71Cytochrome c oxidase subunit 6B1 OS=Bos taurus GN=... [more]
CX6B1_MOUSE3.650e-1645.95Cytochrome c oxidase subunit 6B1 OS=Mus musculus G... [more]
CX6B2_MOUSE2.366e-1542.47Cytochrome c oxidase subunit 6B2 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6480 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739986 ID=CK739986; Name=CK739986; organism=Citrus sinensis; type=EST; length=470bp
CTCGCCTCTTTGTTTCTCTCTTGAACTGATCAAGCATGGCCGCCGACGAG
ATTGAACTCAAAACTGCTCCTGCTGATTTCCGGTTTCCAACAACAAATCA
AACCAGACATTGCTTCACCCGCTACATTGAGTTTCATAGGTGCTTGGCAG
CAAAGGGGGAAGAATCTAATGAATGTGAAAGATTTGCTAAATACTATCGT
TCTCTCTGCCCCGGTGACTGGATTGAGAAGTGGAACGAGCAGAGGGAAAA
TGGGACGTTCCCAGGTCCTCTTTAAACTTGCATCAGCACTCGGGTGGCTT
TTCTTTTGGATGAAACGTTCATATTGCTCTGTTTATTTGCTCCCTGATCA
TGTTTTTTCATTTAAGCCTGAAAACCAATAAGGCAACAGTTAAAGATTGT
TTTGAATGTTGATGCTTTAGTAGTTTAGTTATTGACTTATTGCGCATGGT
CAATAAGCAAAAGACCTTTG
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