CK739989

Overview
NameCK739989
Unique NameCK739989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739989_ssr508 microsatellite CK739989_ssr508:508..517. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13412 contig Csv1_Contig13412:211..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739989 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.953e-49
Identity = 75/105 (71.43%), Postives = 82/105 (78.10%), Query Frame = 1
Query:   91 RKVTVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYXXXXXXXXXXXXXXCVQYEAEFRPNMSIVVKALQPLLKSPPPAAPVS 405
            +K  VYSFGVVLLELLTGRKPVDHTMP+GQQSLVTWATPRLSEDKVKQC+DPKL  ++              CVQYEA+FRPNM+IVVKALQPLL S  PA P S
Sbjct:  260 QKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCIDPKLNNDFPPKAVAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNS-KPAGPES 363          

HSP 2 Score: 68.1662 bits (165), Expect = 1.953e-49
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 3
Query:    3 DMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSD 101
            D AARLHSTRVLGTFGYHAPEYAMTGQ+TQKSD
Sbjct:  231 DTAARLHSTRVLGTFGYHAPEYAMTGQITQKSD 263          
BLAST of CK739989 vs. ExPASy Swiss-Prot
Match: PTI1_SOLLC (Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.249e-48
Identity = 73/100 (73.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:   94 KVTVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYXXXXXXXXXXXXXXCVQYEAEFRPNMSIVVKALQPLLKSPPPA 393
            K  VYSFGVVLLELLTGRKPVDHT+PRGQQSLVTWATPRLSEDKVKQCVD +L  +Y              CVQYEA+FRPNMSIVVKALQPLL  P P+
Sbjct:  255 KSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVKQCVDARLNTDYPPKAIAKMAAVAALCVQYEADFRPNMSIVVKALQPLLPRPVPS 354          

HSP 2 Score: 67.781 bits (164), Expect = 1.249e-48
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 3
Query:    3 DMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSD 101
            DMAARLHSTRVLGTFGYHAPEYAMTGQL+ KSD
Sbjct:  225 DMAARLHSTRVLGTFGYHAPEYAMTGQLSSKSD 257          
BLAST of CK739989 vs. ExPASy Swiss-Prot
Match: Y2706_ARATH (Probable receptor-like protein kinase At2g47060 OS=Arabidopsis thaliana GN=At2g47060 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.640e-47
Identity = 70/96 (72.92%), Postives = 76/96 (79.17%), Query Frame = 1
Query:   94 KVTVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYXXXXXXXXXXXXXXCVQYEAEFRPNMSIVVKALQPLLKS 381
            K  VYSFGVVLLELLTGRKPVDH +PRGQQSLVTWATP+LSEDKVKQCVD +L G+Y              CVQYEA+FRPNMSIVVKALQPLL +
Sbjct:  260 KSDVYSFGVVLLELLTGRKPVDHRLPRGQQSLVTWATPKLSEDKVKQCVDARLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQPLLNA 355          

HSP 2 Score: 67.0106 bits (162), Expect = 6.640e-47
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 3
Query:    3 DMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSD 101
            DMAARLHSTRVLGTFGYHAPEYAMTGQL  KSD
Sbjct:  230 DMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSD 262          
BLAST of CK739989 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.751e-22
Identity = 47/96 (48.96%), Postives = 60/96 (62.50%), Query Frame = 1
Query:   94 KVTVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSE-DKVKQCVDPKLKGEYXXXXXXXXXXXXXXCVQYEAEFRPNMSIVVKALQPLLK 378
            K  VY+FGVV+LELLTGRKP+D +  R +QSLV WATP+L + D + + VDP L G Y              C+Q E EFRP MS VV+ L  L++
Sbjct:  579 KSDVYTFGVVMLELLTGRKPLDSSRTRAEQSLVRWATPQLHDIDALSKMVDPSLNGMYPAKSLSRFADIIALCIQPEPEFRPPMSEVVQQLVRLVQ 674          

HSP 2 Score: 37.7354 bits (86), Expect = 6.751e-22
Identity = 16/26 (61.54%), Postives = 22/26 (84.62%), Query Frame = 3
Query:   24 STRVLGTFGYHAPEYAMTGQLTQKSD 101
            ST+V+G+FGY APE+A++G  T KSD
Sbjct:  556 STQVVGSFGYSAPEFALSGIYTVKSD 581          
BLAST of CK739989 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.152e-21
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   94 KVTVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSE-DKVKQCVDPKLKGEYXXXXXXXXXXXXXXCVQYEAEFRPNMSIVVKALQPL 372
            K  VYSFGVV LEL+TGRK +D  MP G+Q+LV WA P  ++  K  +  DP+LKG +              C+Q +A  RP ++ VV AL  L
Sbjct:  270 KSDVYSFGVVFLELITGRKAIDSEMPHGEQNLVAWARPLFNDRRKFIKLADPRLKGRFPTRALYQALAVASMCIQEQAATRPLIADVVTALSYL 363          

HSP 2 Score: 48.521 bits (114), Expect = 1.152e-21
Identity = 22/26 (84.62%), Postives = 24/26 (92.31%), Query Frame = 3
Query:   24 STRVLGTFGYHAPEYAMTGQLTQKSD 101
            STRV+GT+GY APEYAMTGQLT KSD
Sbjct:  247 STRVMGTYGYCAPEYAMTGQLTVKSD 272          
BLAST of CK739989 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.230e-20
Identity = 46/110 (41.82%), Postives = 60/110 (54.55%), Query Frame = 1
Query:   94 KVTVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDK-VKQCVDPKLKGEYXXXXXXXXXXXXXXCVQYEAEFRPNMSIVVKALQPLLKSP-PPAAPVSET*K 417
            K  +YSFGVVLLEL+TGRK +D+T  R  Q+LV WA P   + +   + VDP L+G+Y              CVQ +   RP +S VV AL  L  S   P +P S + K
Sbjct:  287 KSDIYSFGVVLLELITGRKAIDNTKTRKDQNLVGWARPLFKDRRNFPKMVDPLLQGQYPVRGLYQALAISAMCVQEQPTMRPVVSDVVLALNFLASSKYDPNSPSSSSGK 396          

HSP 2 Score: 46.9802 bits (110), Expect = 1.230e-20
Identity = 21/26 (80.77%), Postives = 24/26 (92.31%), Query Frame = 3
Query:   24 STRVLGTFGYHAPEYAMTGQLTQKSD 101
            STRV+GT+GY AP+YAMTGQLT KSD
Sbjct:  264 STRVMGTYGYCAPDYAMTGQLTFKSD 289          
BLAST of CK739989 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.532e-20
Identity = 51/96 (53.12%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   94 KVTVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSE-DKVKQCVDPKLKGEYXXXXXXXXXXXXXXCVQYEAEFRPNMSIVVKALQPLLK 378
            K  +YSFGVV+LELLTGRKP D T  R +QSLV WATP+L + D + + VDP LKG Y              CVQ E EFRP MS VV+AL  L++
Sbjct:  597 KSDIYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVVLVQ 692          

HSP 2 Score: 26.9498 bits (58), Expect = 4.532e-20
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 3
Query:   48 GYHAPEYAMTGQLTQKSD 101
            GY APE +M+GQ + KSD
Sbjct:  582 GYSAPEVSMSGQYSLKSD 599          
BLAST of CK739989 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.895e-20
Identity = 52/96 (54.17%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   94 KVTVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSE-DKVKQCVDPKLKGEYXXXXXXXXXXXXXXCVQYEAEFRPNMSIVVKALQPLLK 378
            K  VYSFGVV+LELLTGRKP D T  R +QSLV WATP+L + D + + VDP LKG Y              CVQ E EFRP MS VV+AL  L++
Sbjct:  600 KSDVYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALGKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVVLVQ 695          

HSP 2 Score: 26.5646 bits (57), Expect = 5.895e-20
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 3
Query:   48 GYHAPEYAMTGQLTQKSD 101
            GY APE +M+GQ + KSD
Sbjct:  585 GYSAPETSMSGQYSLKSD 602          
BLAST of CK739989 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 8.258e-19
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   94 KVTVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRL-SEDKVKQCVDPKLKGEYXXXXXXXXXXXXXXCVQYEAEFRPNMSIVVKALQPL 372
            K  VYSFGVVLLELL+GR+ +D   P G+ +LV WA P L ++ ++ + +DP+L+G+Y              C+  +A+ RP M+ +VK ++ L
Sbjct:  260 KSDVYSFGVVLLELLSGRRAIDKNQPVGEHNLVDWARPYLTNKRRLLRVMDPRLQGQYSLTRALKIAVLALDCISIDAKSRPTMNEIVKTMEEL 353          

HSP 2 Score: 38.891 bits (89), Expect = 8.258e-19
Identity = 18/26 (69.23%), Postives = 20/26 (76.92%), Query Frame = 3
Query:   24 STRVLGTFGYHAPEYAMTGQLTQKSD 101
            STRV+GT GY APEY  TG L+ KSD
Sbjct:  237 STRVMGTQGYAAPEYLATGHLSVKSD 262          
BLAST of CK739989 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.258e-19
Identity = 42/94 (44.68%), Postives = 52/94 (55.32%), Query Frame = 1
Query:  103 VYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRL-SEDKVKQCVDPKLKGEYXXXXXXXXXXXXXXCVQYEAEFRPNMSIVVKALQPLLKS 381
            VYSFGVVLLELL GR+ +DH  P  +Q+LV WA P L S  KV   VD +L  +Y              C+ +E + RP M  VV+AL  L  S
Sbjct:  257 VYSFGVVLLELLCGRQALDHNRPAKEQNLVDWARPYLTSRRKVLLIVDTRLNSQYKPEGAVRLASIAVQCLSFEPKSRPTMDQVVRALVQLQDS 350          

HSP 2 Score: 41.5874 bits (96), Expect = 8.258e-19
Identity = 18/26 (69.23%), Postives = 20/26 (76.92%), Query Frame = 3
Query:   24 STRVLGTFGYHAPEYAMTGQLTQKSD 101
            STRV+GTFGY APEY  TG L  +SD
Sbjct:  231 STRVMGTFGYAAPEYVSTGHLNARSD 256          
The following BLAST results are available for this feature:
BLAST of CK739989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
Y2197_ARATH1.953e-4971.43Probable protein kinase At2g41970 OS=Arabidopsis t... [more]
PTI1_SOLLC1.249e-4873.00Pto-interacting protein 1 OS=Solanum lycopersicum ... [more]
Y2706_ARATH6.640e-4772.92Probable receptor-like protein kinase At2g47060 OS... [more]
SRF8_ARATH6.751e-2248.96Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
PBS1_ARATH1.152e-2143.62Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
RLCK7_ARATH1.230e-2041.82Probable serine/threonine-protein kinase RLCKVII O... [more]
SRF6_ARATH4.532e-2053.13Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
SRF7_ARATH5.895e-2054.17Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
NAK_ARATH8.258e-1939.36Probable serine/threonine-protein kinase NAK OS=Ar... [more]
Y3545_ARATH8.258e-1944.68Probable receptor-like protein kinase At3g55450 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6483 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739989 ID=CK739989; Name=CK739989; organism=Citrus sinensis; type=EST; length=593bp
CTGATATGGCAGCTCGCCTTCATTCTACTCGAGTTTTGGGAACCTTTGGT
TATCACGCTCCAGAATATGCGATGACGGGACAATTGACCCAGAAAAGTGA
CCGTGTATAGCTTTGGGGTTGTCCTTCTAGAGCTCCTTACTGGGAGGAAA
CCTGTTGATCACACCATGCCTCGTGGACAACAGAGTCTTGTTACCTGGGC
TACTCCAAGATTGAGTGAAGACAAAGTTAAGCAATGTGTTGACCCAAAGC
TTAAGGGTGAATATCCACCCAAAGGAGTTGCTAAGTTGGCTGCAGTAGCA
GCATTATGTGTGCAGTATGAAGCGGAATTCCGGCCAAATATGAGCATTGT
TGTCAAGGCTCTTCAACCTCTTCTGAAATCTCCCCCTCCAGCAGCCCCAG
TTTCAGAGACTTAAAAGGCAAAAGAATTTAGTTCCGCTGCTAGCTTGAAG
TTTCTTGCAGCTTGGTTACAGTTTGTTTCATATGCCTACATATTTCTGCA
AATCACTTATATATATACATATATTTTTTAATTTTTCGTATATGAGATTT
GATTTCGTATAAGAGAGCAGATTTTTAGGATTGGATTTGTACC
back to top