CK739992
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH_BRARA (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 2.176e-45 Identity = 91/126 (72.22%), Postives = 102/126 (80.95%), Query Frame = 3 Query: 24 MASLATIAAVQPVT-IKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398 MAS ATIAAVQP + +KGLGGSSL G KL +KP+RQ+ +PKS +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR S L Y SA+++GD+ Sbjct: 1 MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSASSTGDV 126
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 1.842e-44 Identity = 90/126 (71.43%), Postives = 100/126 (79.37%), Query Frame = 3 Query: 24 MASLATIAAVQP-VTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398 MAS ATIAAVQP +KGLGGSSLAG KL +KP+RQ+ + KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR S L Y SA ++GD+ Sbjct: 1 MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANSTGDV 126
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 4.104e-44 Identity = 88/126 (69.84%), Postives = 101/126 (80.16%), Query Frame = 3 Query: 24 MASLATIAAVQP-VTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398 MASLAT+AAV+P IKGLGGSSLAG KL++KP+R + +PKS +A VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR S L Y SAT++G++ Sbjct: 1 MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSATSTGEV 126
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 2.037e-43 Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = 3 Query: 24 MASLATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398 MASLAT+AAVQP T+KGL GSS+AGTKL +KP RQ+ + + ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKR S L Y SA A D+ Sbjct: 1 MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQDV 125
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH_MAIZE (Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 6.347e-37 Identity = 82/126 (65.08%), Postives = 97/126 (76.98%), Query Frame = 3 Query: 24 MASLATIAAVQPVTIKGLGGSSLAGTKLTV-KPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398 MASLA ++ V+PV IKGL GSS++G KL V +P+ +++R +A AVVAKYGDKSVYFDL+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR S LAY SA+AS D+ Sbjct: 1 MASLAAVS-VKPVAIKGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSASASPDL 123
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSJ (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 2.412e-36 Identity = 77/123 (62.60%), Postives = 91/123 (73.98%), Query Frame = 3 Query: 33 LATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398 +A++ AVQPV +KGL GSS++G KL V+P+ + L R AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR S +AY SA+AS D+ Sbjct: 1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 2.412e-36 Identity = 77/123 (62.60%), Postives = 91/123 (73.98%), Query Frame = 3 Query: 33 LATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398 +A++ AVQPV +KGL GSS++G KL V+P+ + L R AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR S +AY SA+AS D+ Sbjct: 1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH_HORVU (Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.013e-34 Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 3 Query: 33 LATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKA--GAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398 +A++ AVQP +KGL GSS++G KL V+P+ + + +A AVVAKYG+KSVYFDL+D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKR S +AY SA+AS D+ Sbjct: 1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASASPDL 124
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH_PEA (Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14 Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3 Query: 171 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 278 KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ Sbjct: 1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36 The following BLAST results are available for this feature:
BLAST of CK739992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK739992 ID=CK739992; Name=CK739992; organism=Citrus sinensis; type=EST; length=521bpback to top |