CK739992

Overview
NameCK739992
Unique NameCK739992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5089 contig Csv1_Contig5089:182..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH_BRARA (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.176e-45
Identity = 91/126 (72.22%), Postives = 102/126 (80.95%), Query Frame = 3
Query:   24 MASLATIAAVQPVT-IKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398
            MAS ATIAAVQP + +KGLGGSSL G KL +KP+RQ+ +PKS +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA+++GD+
Sbjct:    1 MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSASSTGDV 126          
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.842e-44
Identity = 90/126 (71.43%), Postives = 100/126 (79.37%), Query Frame = 3
Query:   24 MASLATIAAVQP-VTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398
            MAS ATIAAVQP   +KGLGGSSLAG KL +KP+RQ+ + KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA ++GD+
Sbjct:    1 MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANSTGDV 126          
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.104e-44
Identity = 88/126 (69.84%), Postives = 101/126 (80.16%), Query Frame = 3
Query:   24 MASLATIAAVQP-VTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398
            MASLAT+AAV+P   IKGLGGSSLAG KL++KP+R + +PKS +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SAT++G++
Sbjct:    1 MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSATSTGEV 126          
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.037e-43
Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = 3
Query:   24 MASLATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398
            MASLAT+AAVQP T+KGL GSS+AGTKL +KP RQ+ +  + ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKR            S L Y SA A  D+
Sbjct:    1 MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQDV 125          
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH_MAIZE (Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.347e-37
Identity = 82/126 (65.08%), Postives = 97/126 (76.98%), Query Frame = 3
Query:   24 MASLATIAAVQPVTIKGLGGSSLAGTKLTV-KPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398
            MASLA ++ V+PV IKGL GSS++G KL V +P+ +++R    +A AVVAKYGDKSVYFDL+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR            S LAY SA+AS D+
Sbjct:    1 MASLAAVS-VKPVAIKGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSASASPDL 123          
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSJ (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.412e-36
Identity = 77/123 (62.60%), Postives = 91/123 (73.98%), Query Frame = 3
Query:   33 LATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398
            +A++ AVQPV +KGL GSS++G KL V+P+ + L R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR            S +AY SA+AS D+
Sbjct:    1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123          
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.412e-36
Identity = 77/123 (62.60%), Postives = 91/123 (73.98%), Query Frame = 3
Query:   33 LATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398
            +A++ AVQPV +KGL GSS++G KL V+P+ + L R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR            S +AY SA+AS D+
Sbjct:    1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123          
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH_HORVU (Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.013e-34
Identity = 73/124 (58.87%), Postives = 90/124 (72.58%), Query Frame = 3
Query:   33 LATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKA--GAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 398
            +A++ AVQP  +KGL GSS++G KL V+P+   +   + +A   AVVAKYG+KSVYFDL+D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKR            S +AY SA+AS D+
Sbjct:    1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASASPDL 124          
BLAST of CK739992 vs. ExPASy Swiss-Prot
Match: PSAH_PEA (Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3
Query:  171 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 278
            KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ
Sbjct:    1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36          
The following BLAST results are available for this feature:
BLAST of CK739992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSAH_BRARA2.176e-4572.22Photosystem I reaction center subunit VI, chloropl... [more]
PSAH2_ARATH1.842e-4471.43Photosystem I reaction center subunit VI-2, chloro... [more]
PSAH1_ARATH4.104e-4469.84Photosystem I reaction center subunit VI-1, chloro... [more]
PSAH_SPIOL2.037e-4368.00Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_MAIZE6.347e-3765.08Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSJ2.412e-3662.60Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSI2.412e-3662.60Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_HORVU1.013e-3458.87Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_PEA5.780e-1491.67Photosystem I reaction center subunit VI (Fragment... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6486 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739992 ID=CK739992; Name=CK739992; organism=Citrus sinensis; type=EST; length=521bp
AGAATTTACAACAAACCAAGGCCATGGCATCTCTTGCAACCATAGCTGCT
GTGCAACCAGTCACCATCAAAGGCCTTGGAGGCAGCTCTCTTGCTGGAAC
TAAGCTCACCGTCAAGCCAACTCGCCAGAATTTGAGACCCAAAAGCTTCA
AGGCTGGTGCTGTAGTGGCTAAGTATGGTGATAAGAGTGTGTACTTTGAT
TTGGAGGATTTGGGCAACACTACGGGCCAGTGGGACTTGTACGGATCAGA
TGCTCCTTCACCGTACAACTCTCTTCAGAGCAAGTTCTTTGAGACATTTG
CAGCTCCATTCACCAAGAGAGGATTATTGCTCAAGTTCTTGATATTGGGA
GGAGGTTCAACCCTTGCTTACTTCAGTGCTACAGCTAGTGGTGACATTCT
CCCAATCAAGAAGGGCCCTCAACTTCCACCAAAGCTCGGACCACGTGGCA
AGATCTAAATTAGTTTTCAATCCTCCTATTTTAACTTTTCATTGGATGTA
TCTTCTTGGTATTGAAACCTG
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