CK739996

Overview
NameCK739996
Unique NameCK739996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5347 contig Csv1_Contig5347:220..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739996 vs. ExPASy Swiss-Prot
Match: MGST3_MOUSE (Microsomal glutathione S-transferase 3 OS=Mus musculus GN=Mgst3 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.696e-22
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 2
Query:   11 VGAARKKYKVPYPTLYAVESENKEAKLFNCVQRGHQNSLELMPVFFMLMIVGGLKHPCVCAVLGSLFTVTRFFYFKGYATGDPQKRL--AIGKYGFLALLGLMVCT 322
            VG ARKKYKV YP +Y+ + EN    +FNC+QR HQN+LE+ P F   + VGG+ HP + + LG  + + R  Y  GY TGDP KR   A+G     AL+G  VC+
Sbjct:   29 VGKARKKYKVEYPVMYSTDPEN--GHMFNCIQRAHQNTLEVYPPFLFFLTVGGVYHPRIASGLGLAWIIGRVLYAYGYYTGDPSKRYRGAVGSLALFALMGTTVCS 132          
BLAST of CK739996 vs. ExPASy Swiss-Prot
Match: MGST3_BOVIN (Microsomal glutathione S-transferase 3 OS=Bos taurus GN=MGST3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.269e-21
Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 2
Query:   11 VGAARKKYKVPYPTLYAVESENKEAKLFNCVQRGHQNSLELMPVFFMLMIVGGLKHPCVCAVLGSLFTVTRFFYFKGYATGDPQKRLAIGKYGFLALLGLMVCTISFGINQL 346
            V  ARKKYKV YPT+Y+ + EN    +FNC+QR HQN+LE+ P F   + VGG+ HP + + LG  + V R  Y  GY TG+P+KR   G   F+AL+GLM  T+      L
Sbjct:   29 VSKARKKYKVEYPTMYSTDPEN--GHIFNCIQRAHQNTLEVYPPFLFFLAVGGVYHPRIVSGLGLAWIVGRVLYAYGYYTGEPRKRQR-GALSFIALIGLMGTTVCSAFQHL 137          
BLAST of CK739996 vs. ExPASy Swiss-Prot
Match: MGST3_HUMAN (Microsomal glutathione S-transferase 3 OS=Homo sapiens GN=MGST3 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.403e-20
Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 2
Query:   11 VGAARKKYKVPYPTLYAVESENKEAKLFNCVQRGHQNSLELMPVFFMLMIVGGLKHPCVCAVLGSLFTVTRFFYFKGYATGDPQKRLAIGKYGFLALLGLMVCTISFGINQL 346
            V  ARKKYKV YP +Y+ + EN    +FNC+QR HQN+LE+ P F   + VGG+ HP + + LG  + V R  Y  GY TG+P KR + G  G +ALLGL+  T+      L
Sbjct:   29 VSKARKKYKVEYPIMYSTDPEN--GHIFNCIQRAHQNTLEVYPPFLFFLAVGGVYHPRIASGLGLAWIVGRVLYAYGYYTGEPSKR-SRGALGSIALLGLVGTTVCSAFQHL 137          
The following BLAST results are available for this feature:
BLAST of CK739996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MGST3_MOUSE5.696e-2247.17Microsomal glutathione S-transferase 3 OS=Mus musc... [more]
MGST3_BOVIN1.269e-2146.43Microsomal glutathione S-transferase 3 OS=Bos taur... [more]
MGST3_HUMAN1.403e-2045.54Microsomal glutathione S-transferase 3 OS=Homo sap... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6490 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739996 ID=CK739996; Name=CK739996; organism=Citrus sinensis; type=EST; length=468bp
GGGTTTTCAAGTCGGAGCTGCCCGCAAGAAGTATAAGGTGCCCTATCCTA
CCCTCTACGCTGTAGAATCTGAGAACAAAGAAGCTAAGCTCTTTAACTGC
GTTCAGAGAGGGCATCAGAACTCTTTGGAACTTATGCCGGTGTTTTTCAT
GTTGATGATAGTCGGAGGGTTAAAGCATCCATGTGTTTGTGCCGTACTCG
GATCCCTTTTCACTGTCACTCGTTTTTTCTACTTCAAAGGCTATGCTACT
GGCGATCCTCAGAAACGCCTCGCTATTGGGAAATATGGATTCTTGGCTTT
GCTTGGACTTATGGTTTGCACAATTTCATTTGGGATCAATCAGCTTCGAG
GATAAACACTTGTAGTTCATCCTTTCTTTTGCATGGGACTCGCTTTCCCT
CTATCCATCTTTTTTATTCTCTATTTCTCTGGTAGCAGCTTTATGTTTTT
GTGTTGGGAGCAAAACTA
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