CK740005
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1_PEA (Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 7.028e-32 Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 Query: 102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG Sbjct: 332 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 365 HSP 2 Score: 75.485 bits (184), Expect = 7.028e-32 Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 Query: 2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA Sbjct: 299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331 HSP 3 Score: 22.7126 bits (47), Expect = 7.028e-32 Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 Query: 205 GDLAKVQRAV 234 GDLAKVQRAV Sbjct: 366 GDLAKVQRAV 375
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 7.029e-32 Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 Query: 102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG Sbjct: 332 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 365 HSP 2 Score: 75.485 bits (184), Expect = 7.029e-32 Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 Query: 2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA Sbjct: 299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331 HSP 3 Score: 22.7126 bits (47), Expect = 7.029e-32 Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 Query: 205 GDLAKVQRAV 234 GDLAKVQRAV Sbjct: 366 GDLAKVQRAV 375
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 7.029e-32 Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 Query: 102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG Sbjct: 332 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 365 HSP 2 Score: 75.485 bits (184), Expect = 7.029e-32 Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 Query: 2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA Sbjct: 299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331 HSP 3 Score: 22.7126 bits (47), Expect = 7.029e-32 Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 Query: 205 GDLAKVQRAV 234 GDLAKVQRAV Sbjct: 366 GDLAKVQRAV 375
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA6_ARATH (Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=TUBA6 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.186e-31 Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 3 Query: 102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203 V TIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG Sbjct: 332 VGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 365 HSP 2 Score: 76.2554 bits (186), Expect = 1.186e-31 Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 2 Query: 2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAACG 106 +SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA G Sbjct: 299 ASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVG 333 HSP 3 Score: 22.7126 bits (47), Expect = 1.186e-31 Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 Query: 205 GDLAKVQRAV 234 GDLAKVQRAV Sbjct: 366 GDLAKVQRAV 375
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.186e-31 Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 3 Query: 102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203 V TIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG Sbjct: 332 VGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 365 HSP 2 Score: 76.2554 bits (186), Expect = 1.186e-31 Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 2 Query: 2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAACG 106 +SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA G Sbjct: 299 ASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVG 333 HSP 3 Score: 22.7126 bits (47), Expect = 1.186e-31 Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 Query: 205 GDLAKVQRAV 234 GDLAKVQRAV Sbjct: 366 GDLAKVQRAV 375
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.540e-31 Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 Query: 102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG Sbjct: 332 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 365 HSP 2 Score: 74.3294 bits (181), Expect = 1.540e-31 Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 2 Query: 2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100 +SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA Sbjct: 299 ASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331 HSP 3 Score: 22.7126 bits (47), Expect = 1.540e-31 Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 Query: 205 GDLAKVQRAV 234 GDLAKVQRAV Sbjct: 366 GDLAKVQRAV 375
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.540e-31 Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 3 Query: 102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG Sbjct: 332 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 365 HSP 2 Score: 74.3294 bits (181), Expect = 1.540e-31 Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 2 Query: 2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100 +SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA Sbjct: 299 ASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331 HSP 3 Score: 22.7126 bits (47), Expect = 1.540e-31 Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 Query: 205 GDLAKVQRAV 234 GDLAKVQRAV Sbjct: 366 GDLAKVQRAV 375
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.540e-31 Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3 Query: 102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203 V TIKTKRT+QFVDWCPTGFKCGINYQPPTVVPG Sbjct: 332 VGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPG 365 HSP 2 Score: 76.2554 bits (186), Expect = 1.540e-31 Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 2 Query: 2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAACG 106 +SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA G Sbjct: 299 ASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVG 333 HSP 3 Score: 22.7126 bits (47), Expect = 1.540e-31 Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 Query: 205 GDLAKVQRAV 234 GDLAKVQRAV Sbjct: 366 GDLAKVQRAV 375
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.000e-31 Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 Query: 102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203 VATIKTKRTIQFVDWCPTGFKCGINYQPP+VVPG Sbjct: 332 VATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPG 365 HSP 2 Score: 75.485 bits (184), Expect = 2.000e-31 Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 Query: 2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA Sbjct: 299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331 HSP 3 Score: 22.7126 bits (47), Expect = 2.000e-31 Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 Query: 205 GDLAKVQRAV 234 GDLAKVQRAV Sbjct: 366 GDLAKVQRAV 375
BLAST of CK740005 vs. ExPASy Swiss-Prot
Match: TBA2_ORYSJ (Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica GN=TUBA PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.000e-31 Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 Query: 102 VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 203 VATIKTKRTIQFVDWCPTGFKCGINYQPP+VVPG Sbjct: 332 VATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPG 365 HSP 2 Score: 75.485 bits (184), Expect = 2.000e-31 Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2 Query: 2 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 100 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA Sbjct: 299 SSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAA 331 HSP 3 Score: 22.7126 bits (47), Expect = 2.000e-31 Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 Query: 205 GDLAKVQRAV 234 GDLAKVQRAV Sbjct: 366 GDLAKVQRAV 375 The following BLAST results are available for this feature:
BLAST of CK740005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 145
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Sequences
The
following sequences are available for this feature:
EST sequence >CK740005 ID=CK740005; Name=CK740005; organism=Citrus sinensis; type=EST; length=236bpback to top |