CK740008

Overview
NameCK740008
Unique NameCK740008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length399
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1549 contig Csv1_Contig1549:497..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740008 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.140e-18
Identity = 54/88 (61.36%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 AKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGESTEPKE---GVVDTPAESKGVV----DTPAET 243
            AKMSFEEKDLT D+SGLGPFEL+ALQDWEYKFMSKY KVG++K      + AS  E TE  E    V  TP   K VV    D PAET
Sbjct:  129 AKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTVKVAGSEPETASVSEPTENVEQDAHVTTTP--GKTVVDKSDDAPAET 214          
BLAST of CK740008 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.270e-17
Identity = 57/117 (48.72%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    1 AKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKSTVPVTDGASSGESTEPK----EGVVDTPAESKGVVDTPAETKEVDIAKPAEYGPSETADAGPEATPSSDDTKK 339
            AKMSFE++DLTGDISGLG FELEALQDWEYKFMSKYVKVG+I+      +G  S E +E K    EG+     E    + T  ET      K A     ET +    AT   D  K+
Sbjct:  125 AKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTIQK--KDGEGKESSEPSEAKTASAEGLSTNTGEEASAI-THDETSRSTGEKIA-----ETTEKKDVATDDDDAAKE 233          
The following BLAST results are available for this feature:
BLAST of CK740008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MSBP1_ARATH2.140e-1861.36Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]
MSBP2_ARATH5.270e-1748.72Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6502 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740008 ID=CK740008; Name=CK740008; organism=Citrus sinensis; type=EST; length=399bp
GCCAAGATGTCTTTTGAGGAAAAAGATTTAACTGGTGATATCTCTGGTCT
TGGTCCATTTGAGTTGGAGGCATTGCAGGACTGGGAGTATAAGTTCATGA
GCAAGTATGTTAAGGTTGGATCTATCAAGTCGACAGTTCCAGTAACAGAT
GGAGCCTCCTCTGGTGAATCCACTGAGCCTAAAGAAGGAGTTGTTGATAC
ACCTGCAGAAAGTAAAGGAGTTGTTGATACACCTGCAGAAACTAAAGAAG
TAGATATCGCTAAGCCTGCTGAATATGGTCCGTCAGAAACTGCAGACGCT
GGACCTGAGGCAACCCCATCTTCTGATGATACTAAGAAGGAGTAAGTCCG
AACCCCATCTGTTGATGATGCTTGAGGAGTAGAATTTAATCATAAGGCC
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