CK740014

Overview
NameCK740014
Unique NameCK740014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5829 contig Csv1_Contig5829:1000..1261. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.787e-23
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 1
Query:  109 LSPGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264
            L   GT+NHL+LWDLRP  LTGNK EK  D+ NITVNKNAV GD++A++PGG
Sbjct:  331 LVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGG 382          

HSP 2 Score: 48.521 bits (114), Expect = 3.787e-23
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 3
Query:    3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116
            VALK+A +  FK YA QVK NA A+GN L  KGY LVT
Sbjct:  296 VALKEADSQEFKEYALQVKKNAAAIGNALMNKGYKLVT 333          
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.509e-17
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   97 RDTALSPGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264
            R  +L  GGT+NHLVL DLRP GL G + E++ +L +IT NKN   GD SA+ PGG
Sbjct:  368 RGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGG 423          

HSP 2 Score: 43.5134 bits (101), Expect = 2.509e-17
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 3
Query:    3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116
            VALKQA TP F+ Y+ Q+  NA A+ N L  +GYSLV+
Sbjct:  337 VALKQACTPMFREYSLQILKNAQAMANALLERGYSLVS 374          
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.058e-17
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   31 HSRPMRNKSRPMQLHLGTT*RARDTALSPGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264
            +++ +R  S+ M    G   + R  +L   GT+NHLVLWDLRP G+TG+K+EK CD  +ITVNKNAV+GD++A+APGG
Sbjct:  332 YTKQVRRNSQTM----GEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGG 405          
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 9.314e-17
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   97 RDTALSPGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264
            R  +L  GGT+NHLVL DLRP GL G + E++ +L +IT NKN   GD SA+ PGG
Sbjct:  368 RGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGG 423          

HSP 2 Score: 41.5874 bits (96), Expect = 9.314e-17
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 3
Query:    3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116
            VALKQA TP F+ Y+ QV  NA A+ + L  +GYSLV+
Sbjct:  337 VALKQACTPMFREYSLQVLKNARAMADALLERGYSLVS 374          
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 9.314e-17
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   97 RDTALSPGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264
            R  +L  GGT+NHLVL DLRP GL G + E++ +L +IT NKN   GD SA+ PGG
Sbjct:  368 RGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGG 423          

HSP 2 Score: 41.5874 bits (96), Expect = 9.314e-17
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 3
Query:    3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116
            VALKQA TP F+ Y+ QV  NA A+ + L  +GYSLV+
Sbjct:  337 VALKQACTPMFREYSLQVLKNARAMADALLERGYSLVS 374          
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.452e-16
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1
Query:  118 GGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264
            GGT+NHLVL DL+P G+ G++VE++ +L  +  NKN V GD SAL PGG
Sbjct:  386 GGTDNHLVLIDLKPQGIDGSRVERVLELVGVAANKNTVPGDKSALTPGG 434          

HSP 2 Score: 40.0466 bits (92), Expect = 3.452e-16
Identity = 23/44 (52.27%), Postives = 27/44 (61.36%), Query Frame = 3
Query:    3 VALKQASTPAFKAYAKQVKANAVALGNYL------TGKGYSLVT 116
            VALKQA TP F+AY  QV ANA AL   L       G GY++V+
Sbjct:  342 VALKQAQTPEFRAYQSQVLANATALAARLGEPKDKNGLGYTIVS 385          
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 9.870e-16
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1
Query:  121 GTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264
            GT++H+VL DLRP+G+ G +VE L +  NIT NKNAV GD SAL PGG
Sbjct:  345 GTDSHMVLVDLRPIGVDGARVEFLLEQINITCNKNAVPGDKSALTPGG 392          

HSP 2 Score: 39.6614 bits (91), Expect = 9.870e-16
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 3
Query:    3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116
            VALKQA++P FK Y ++V ANA AL   L   GY LV+
Sbjct:  306 VALKQAASPEFKEYQQKVVANAKALEKKLKELGYKLVS 343          
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.163e-15
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1
Query:  109 LSPGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264
            L  GGTENHLVL +L+  G+ G++VEK+ +L +I  NKN V GD SA+ PGG
Sbjct:  378 LVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGG 429          

HSP 2 Score: 40.817 bits (94), Expect = 2.163e-15
Identity = 19/38 (50.00%), Postives = 27/38 (71.05%), Query Frame = 3
Query:    3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116
            VALKQA+TP ++AY +QV +N+      L+ KGY LV+
Sbjct:  343 VALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVS 380          
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 55.8398 bits (133), Expect = 2.815e-15
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1
Query:  118 GGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264
            GG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G
Sbjct:  352 GGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSG 400          

HSP 2 Score: 45.0542 bits (105), Expect = 2.815e-15
Identity = 23/38 (60.53%), Postives = 26/38 (68.42%), Query Frame = 3
Query:    3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116
            VALKQA TP F+AY +QV AN  AL   L G GY +VT
Sbjct:  314 VALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVT 351          
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 55.8398 bits (133), Expect = 2.815e-15
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1
Query:  118 GGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264
            GG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G
Sbjct:  352 GGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSG 400          

HSP 2 Score: 45.0542 bits (105), Expect = 2.815e-15
Identity = 23/38 (60.53%), Postives = 26/38 (68.42%), Query Frame = 3
Query:    3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116
            VALKQA TP F+AY +QV AN  AL   L G GY +VT
Sbjct:  314 VALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVT 351          
The following BLAST results are available for this feature:
BLAST of CK740014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
GLYC1_DICDI3.787e-2367.31Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYM_BOVIN2.509e-1755.36Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC2_DICDI7.058e-1752.56Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYM_RABIT9.314e-1755.36Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_HUMAN9.314e-1755.36Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_NEUCR3.452e-1657.14Putative serine hydroxymethyltransferase, mitochon... [more]
GLYC_NEUCR9.870e-1662.50Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYM_PEA2.163e-1555.77Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_SHEEP2.815e-1551.02Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYC_BOVIN2.815e-1551.02Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6508 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740014 ID=CK740014; Name=CK740014; organism=Citrus sinensis; type=EST; length=264bp
CTGTTGCCCTGAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCGAAA
CAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAAGGG
ATACAGCCTTGTCACCTGGTGGAACTGAGAACCACCTTGTTCTCTGGGAT
CTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGACCT
TTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGCCT
TGGCCCCTGGAGGA
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