CK740024

Overview
NameCK740024
Unique NameCK740024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length236
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7985 contig Csv1_Contig7985:499..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740024 vs. ExPASy Swiss-Prot
Match: AFC1_ARATH (Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana GN=AFC1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.874e-13
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 2 
Query:   92 DLKPENVLLVSSEYIKVADYKSSLHTPKDSCYFKRMPKSSAIKVIDFG 235
            DLKPEN+LLVSSEYIK+ DYK      KD  YFK +PKSSAIK+IDFG
Sbjct:  240 DLKPENILLVSSEYIKIPDYKFLSRPTKDGSYFKNLPKSSAIKLIDFG 287

HSP 2 Score: 22.7126 bits (47), Expect = 1.874e-13
Identity = 9/21 (42.86%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:   37 QNMIKVATVMHDLCMIHT*LK 99
            + +++    MHDL +IHT LK
Sbjct:  222 RQLLESVAYMHDLRLIHTDLK 242
[Close]
BLAST of CK740024 vs. ExPASy Swiss-Prot
Match: AFC2_ARATH (Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 5.612e-12
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:   92 DLKPENVLLVSSEYIKVADYKSSLHTPKDSCYFKRMPKSSAIKVIDFG 235
            DLKPEN+LLVSS+Y+K+ +YK S    +D CY KR+PKSSAIKVIDFG
Sbjct:  223 DLKPENILLVSSDYVKIPEYKGS-RLQRDVCY-KRVPKSSAIKVIDFG 268

HSP 2 Score: 23.8682 bits (50), Expect = 5.612e-12
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:   43 MIKVATVMHDLCMIHT*LK 99
            +++    MHDL MIHT LK
Sbjct:  207 LLECVAFMHDLRMIHTDLK 225
The following BLAST results are available for this feature:
BLAST of CK740024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AFC1_ARATH1.874e-1370.83Serine/threonine-protein kinase AFC1 OS=Arabidopsi... [more]
AFC2_ARATH5.612e-1268.75Serine/threonine-protein kinase AFC2 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6518 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740024 ID=CK740024; Name=CK740024; organism=Citrus sinensis; type=EST; length=236bp
CTGCTATGATAGAAATTGAAGTACTTCAACAACTTGCAAAACATGATAAA
GGTGGCAACCGTTATGCATGATCTGTGTATGATACATACCTGACTTAAAG
CCTGAGAACGTTCTACTTGTTTCTTCCGAGTATATTAAGGTTGCTGACTA
CAAGAGTTCTTTGCACACACCAAAAGATTCTTGCTACTTTAAAAGAATGC
CAAAGTCAAGTGCTATTAAGGTGATTGATTTTGGCA
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