CK740038

Overview
NameCK740038
Unique NameCK740038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13422 contig Csv1_Contig13422:392..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740038 vs. ExPASy Swiss-Prot
Match: COBL1_ORYSJ (COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.439e-24
Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 2
Query:    2 NVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSRPVXXXXXXXXXXXXXWVFLLAYA 223
            NVQSELLF+KD  +FTFEKGWAFPRR+YFNGDNCVMPPPDAYPWLPNAS+R +               FL+ YA
Sbjct:  373 NVQSELLFKKDPKSFTFEKGWAFPRRVYFNGDNCVMPPPDAYPWLPNASTRVMSSILLPFITIWTALTFLMVYA 446          
BLAST of CK740038 vs. ExPASy Swiss-Prot
Match: COBRA_ARATH (Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.887e-22
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 2
Query:    2 NVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSR 154
            NVQSE+LFRKD STFTFEKGWAFPRRIYFNGDNCVMPPPD+YP+LPN  SR
Sbjct:  385 NVQSEILFRKDQSTFTFEKGWAFPRRIYFNGDNCVMPPPDSYPFLPNGGSR 435          
BLAST of CK740038 vs. ExPASy Swiss-Prot
Match: COBL1_ARATH (COBRA-like protein 1 OS=Arabidopsis thaliana GN=COBL1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.465e-22
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 2
Query:    2 NVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASS 151
            NVQSELLF+K+AS FTFEKGWAFPRRIYFNGDNCVMPPPD+YPWLPN  S
Sbjct:  380 NVQSELLFQKEASAFTFEKGWAFPRRIYFNGDNCVMPPPDSYPWLPNTGS 429          
BLAST of CK740038 vs. ExPASy Swiss-Prot
Match: COBL2_ARATH (COBRA-like protein 2 OS=Arabidopsis thaliana GN=COBL2 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.725e-21
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 2
Query:    2 NVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAS 148
            NVQSELLF+K+   FTFEKGWAFPRRIYFNGDNCVMPPPD+YPWLPNAS
Sbjct:  371 NVQSELLFQKNPLEFTFEKGWAFPRRIYFNGDNCVMPPPDSYPWLPNAS 419          
BLAST of CK740038 vs. ExPASy Swiss-Prot
Match: COBL3_ORYSJ (COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.071e-21
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 2
Query:    2 NVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAS 148
            N QSELL RKD+  FTF+KGWAFP R+YFNGDNCVMPPPDAYPWLPNAS
Sbjct:  384 NAQSELLLRKDSKDFTFDKGWAFPHRVYFNGDNCVMPPPDAYPWLPNAS 432          
BLAST of CK740038 vs. ExPASy Swiss-Prot
Match: COBL2_ORYSJ (COBRA-like protein 2 OS=Oryza sativa subsp. japonica GN=BC1L2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.139e-20
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:    2 NVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASS 151
            NVQSELLFRKD STFTF+KGWAFPRRIYFNG++CVMP PD YPWLP +S+
Sbjct:  375 NVQSELLFRKDRSTFTFDKGWAFPRRIYFNGESCVMPSPDLYPWLPPSST 424          
BLAST of CK740038 vs. ExPASy Swiss-Prot
Match: COBL6_ORYSJ (COBRA-like protein 6 OS=Oryza sativa subsp. japonica GN=BC1L7 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.159e-18
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 2
Query:    2 NVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAS 148
            NVQSE+L RKDA TFTF +GWAFPR++YFNGD C MPPPD+YP+LPNA+
Sbjct:  380 NVQSEVLMRKDARTFTFRQGWAFPRKVYFNGDECQMPPPDSYPYLPNAA 428          
BLAST of CK740038 vs. ExPASy Swiss-Prot
Match: COBL5_ORYSJ (COBRA-like protein 5 OS=Oryza sativa subsp. japonica GN=BC1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.072e-17
Identity = 36/49 (73.47%), Postives = 44/49 (89.80%), Query Frame = 2
Query:    2 NVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAS 148
            NVQSE+L RKD +TFTF +GWAFPR+IYFNGD C MPPPD+YP+LPN++
Sbjct:  397 NVQSEVLMRKDYNTFTFSQGWAFPRKIYFNGDECKMPPPDSYPYLPNSA 445          
BLAST of CK740038 vs. ExPASy Swiss-Prot
Match: COBL5_ORYSI (COBRA-like protein 5 OS=Oryza sativa subsp. indica GN=BC1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.072e-17
Identity = 36/49 (73.47%), Postives = 44/49 (89.80%), Query Frame = 2
Query:    2 NVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAS 148
            NVQSE+L RKD +TFTF +GWAFPR+IYFNGD C MPPPD+YP+LPN++
Sbjct:  397 NVQSEVLMRKDYNTFTFSQGWAFPRKIYFNGDECKMPPPDSYPYLPNSA 445          
BLAST of CK740038 vs. ExPASy Swiss-Prot
Match: COBL4_ARATH (COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.072e-17
Identity = 33/49 (67.35%), Postives = 45/49 (91.84%), Query Frame = 2
Query:    2 NVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAS 148
            NVQSE+L +KD  TFTF++GWAFPR++YFNGD C++PPPD+YP+LPN++
Sbjct:  363 NVQSEVLLQKDQKTFTFKQGWAFPRKVYFNGDECMLPPPDSYPFLPNSA 411          
The following BLAST results are available for this feature:
BLAST of CK740038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COBL1_ORYSJ3.439e-2466.22COBRA-like protein 1 OS=Oryza sativa subsp. japoni... [more]
COBRA_ARATH1.887e-2288.24Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 ... [more]
COBL1_ARATH2.465e-2288.00COBRA-like protein 1 OS=Arabidopsis thaliana GN=CO... [more]
COBL2_ARATH2.725e-2187.76COBRA-like protein 2 OS=Arabidopsis thaliana GN=CO... [more]
COBL3_ORYSJ6.071e-2183.67COBRA-like protein 3 OS=Oryza sativa subsp. japoni... [more]
COBL2_ORYSJ5.139e-2082.00COBRA-like protein 2 OS=Oryza sativa subsp. japoni... [more]
COBL6_ORYSJ2.159e-1875.51COBRA-like protein 6 OS=Oryza sativa subsp. japoni... [more]
COBL5_ORYSJ1.072e-1773.47COBRA-like protein 5 OS=Oryza sativa subsp. japoni... [more]
COBL5_ORYSI1.072e-1773.47COBRA-like protein 5 OS=Oryza sativa subsp. indica... [more]
COBL4_ARATH4.072e-1767.35COBRA-like protein 4 OS=Arabidopsis thaliana GN=CO... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6532 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740038 ID=CK740038; Name=CK740038; organism=Citrus sinensis; type=EST; length=312bp
GAACGTGCAGTCAGAGCTGCTGTTTCGAAAAGATGCATCAACATTTACTT
TTGAGAAGGGTTGGGCTTTCCCTAGAAGGATTTATTTTAATGGAGATAAC
TGTGTGATGCCACCTCCAGATGCCTACCCGTGGTTGCCAAACGCAAGTTC
CCGGCCTGTTATTTCTCTGCTTCGTTCAGCCATAATAATCTTGGCATCTT
GGGTATTCTTATTGGCTTATGCGTGATGAATTATATCTGAGGCCAAAAGG
CTAACTTCTAGAACGTTCTTGACGTGCTATCTGGTCTGATATGTGCTGAA
GCATATGTAATC
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