CK740045

Overview
NameCK740045
Unique NameCK740045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length317
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740045 vs. ExPASy Swiss-Prot
Match: NIPA2_PONAB (Magnesium transporter NIPA2 OS=Pongo abelii GN=NIPA2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.485e-19
Identity = 46/105 (43.81%), Postives = 70/105 (66.67%), Query Frame = 2
Query:    2 GSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVI 316
            GST +V+HAP E EIE++ E+ +   +P F+++A LV+    ILIF   P++GQT+I+VYI +CS++G+ SV  VK +GIA+K   +G   L +P  W   L +I
Sbjct:  122 GSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLI 226          
BLAST of CK740045 vs. ExPASy Swiss-Prot
Match: NIPA2_HUMAN (Magnesium transporter NIPA2 OS=Homo sapiens GN=NIPA2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.485e-19
Identity = 46/105 (43.81%), Postives = 70/105 (66.67%), Query Frame = 2
Query:    2 GSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVI 316
            GST +V+HAP E EIE++ E+ +   +P F+++A LV+    ILIF   P++GQT+I+VYI +CS++G+ SV  VK +GIA+K   +G   L +P  W   L +I
Sbjct:  122 GSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLI 226          
BLAST of CK740045 vs. ExPASy Swiss-Prot
Match: NIPA2_BOVIN (Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.485e-19
Identity = 46/105 (43.81%), Postives = 71/105 (67.62%), Query Frame = 2
Query:    2 GSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVI 316
            GST +V+HAP E EIE++ E+ +   +P F+++A LV+    ILIF   P++GQT+I+VYI +CS++G++SV   K +GIA+K   +G   L +P TW   L +I
Sbjct:  122 GSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVSLILIFVVGPRHGQTNILVYITICSVIGAVSVSCAKGLGIAIKELFAGKPVLQHPLTWILLLSLI 226          
BLAST of CK740045 vs. ExPASy Swiss-Prot
Match: NIPA2_MOUSE (Magnesium transporter NIPA2 OS=Mus musculus GN=Nipa2 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.641e-19
Identity = 46/106 (43.40%), Postives = 71/106 (66.98%), Query Frame = 2
Query:    2 GSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTW--AFTLIV 313
            GST +V+HAP E EIE++ E+ +   +P F+++A  V+    I IF   P++GQT+I+VYI +CS++G+ SV  VK +GIA+K  L+G   L +P  W   F+L+V
Sbjct:  122 GSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATFVVIVALIFIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKELLAGKPVLQHPLAWILLFSLVV 227          
BLAST of CK740045 vs. ExPASy Swiss-Prot
Match: NIPA4_HUMAN (Magnesium transporter NIPA4 OS=Homo sapiens GN=NIPAL4 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 37/104 (35.58%), Postives = 70/104 (67.31%), Query Frame = 2
Query:    2 GSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIV 313
            GST +V+HAP E ++ +++E+ +   +  F+++A L++ +  ILIF   P+YGQ +I++YI +CS++G+ SV +VK +GI +K    G+  + +P  +  +LI+
Sbjct:  230 GSTVMVIHAPEEEKVTTIMEMASKMKDTGFIVFAVLLLVSCLILIFVIAPRYGQRNILIYIIICSVIGAFSVAAVKGLGITIKNFFQGLPVVRHPLPYILSLIL 333          
BLAST of CK740045 vs. ExPASy Swiss-Prot
Match: NIPA4_MOUSE (Magnesium transporter NIPA4 OS=Mus musculus GN=Nipal4 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.536e-16
Identity = 37/104 (35.58%), Postives = 69/104 (66.35%), Query Frame = 2
Query:    2 GSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIV 313
            GST +V+HAP E ++ +V E+ +   +  F+++A L++ +  ILIF   P+YGQ +I++YI +CS++GS SV +VK +G+ ++    G+  + +P  +  +LI+
Sbjct:  170 GSTVMVIHAPKEEKVTTVAEMASKMKDTGFIVFAVLLVVSCLILIFIVAPRYGQRNILIYIIICSVIGSFSVTAVKGLGVTIRNFFQGLPVVRHPLPYILSLIL 273          
BLAST of CK740045 vs. ExPASy Swiss-Prot
Match: NIPA3_PONAB (Magnesium transporter NIPA3 OS=Pongo abelii GN=NIPAL1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.301e-15
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 2
Query:    2 GSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVI 316
            GST +V+HAP E E+ S+ E+     +P F+ +A +V     +LI    P+ GQT+I+VYI +CSL+G+ SV SVK +GIA+K  +    + +Y     F L+ +
Sbjct:  180 GSTVMVIHAPQEEEVTSLHEMEMKLRDPGFISFAVIVTVISLVLILIVAPKKGQTNILVYISICSLIGAFSVSSVKGLGIAIKELIEW--KPVYKHPLVFVLLAV 282          
BLAST of CK740045 vs. ExPASy Swiss-Prot
Match: NIPA3_HUMAN (Magnesium transporter NIPA3 OS=Homo sapiens GN=NIPAL1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.699e-15
Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 2
Query:    2 GSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVI 316
            GST +V+HAP E E+ S+ E+     +P F+ +A ++     +LI    P+ GQT+I+VYI +CSL+G+ SV SVK +GIA+K  +    + +Y     F L+ +
Sbjct:  180 GSTVMVIHAPQEEEVTSLHEMEMKLRDPGFISFAVIITVISLVLILIVAPKKGQTNILVYISICSLIGAFSVSSVKGLGIAIKELIEW--KPVYKHPLVFVLLAV 282          
BLAST of CK740045 vs. ExPASy Swiss-Prot
Match: NIPA3_MOUSE (Magnesium transporter NIPA3 OS=Mus musculus GN=Nipal1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.455e-15
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 2
Query:    2 GSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWAFTLIVI 316
            GST +V+HAP E E+ S+ E+     +P F+ +A ++     +LI    P+ GQT+I+VYI +CSL+G+ SV SVK +GIA+K  L    + +Y     F L+ +
Sbjct:  180 GSTVMVIHAPQEGEVTSLHEMEMKLRDPGFVSFAVIISVISLVLILIVAPKKGQTNILVYIAICSLIGAFSVSSVKGLGIAIKELLE--RKPVYKDPLFFILLTM 282          
BLAST of CK740045 vs. ExPASy Swiss-Prot
Match: NIPA1_MOUSE (Magnesium transporter NIPA1 OS=Mus musculus GN=Nipa1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.346e-12
Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 2
Query:    2 GSTTIVLHAPAEREIESVIEVWNLATEPAFLLYAALVITAVFILIFHYIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIA 244
            GS  +++H+P    + +  E+    T P F+ Y  +V+  + +LIF   P +G T+IMVYI +CSL+GS +V S K IG+A
Sbjct:  126 GSVVLIIHSPKSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSFTVPSTKGIGLA 206          
The following BLAST results are available for this feature:
BLAST of CK740045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NIPA2_PONAB1.485e-1943.81Magnesium transporter NIPA2 OS=Pongo abelii GN=NIP... [more]
NIPA2_HUMAN1.485e-1943.81Magnesium transporter NIPA2 OS=Homo sapiens GN=NIP... [more]
NIPA2_BOVIN1.485e-1943.81Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2... [more]
NIPA2_MOUSE5.641e-1943.40Magnesium transporter NIPA2 OS=Mus musculus GN=Nip... [more]
NIPA4_HUMAN1.176e-1635.58Magnesium transporter NIPA4 OS=Homo sapiens GN=NIP... [more]
NIPA4_MOUSE1.536e-1635.58Magnesium transporter NIPA4 OS=Mus musculus GN=Nip... [more]
NIPA3_PONAB1.301e-1539.05Magnesium transporter NIPA3 OS=Pongo abelii GN=NIP... [more]
NIPA3_HUMAN1.699e-1538.10Magnesium transporter NIPA3 OS=Homo sapiens GN=NIP... [more]
NIPA3_MOUSE6.455e-1539.05Magnesium transporter NIPA3 OS=Mus musculus GN=Nip... [more]
NIPA1_MOUSE1.346e-1239.51Magnesium transporter NIPA1 OS=Mus musculus GN=Nip... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6539 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740045 ID=CK740045; Name=CK740045; organism=Citrus sinensis; type=EST; length=317bp
GGGCTCTACAACAATTGTGTTGCATGCTCCTGCAGAACGTGAGATAGAGT
CTGTGATAGAAGTTTGGAATCTTGCTACAGAGCCAGCTTTTCTCTTATAT
GCAGCTCTGGTCATAACAGCTGTATTTATCCTTATATTCCACTATATCCC
GCAATATGGCCAGACACACATAATGGTGTATATAGGAGTTTGTTCCCTTG
TAGGTTCTTTGTCGGTTATGAGTGTTAAGGCAATTGGAATTGCTCTGAAG
TTGACATTGTCAGGAATGAATCAGCTAATATATCCCCAAACATGGGCCTT
CACGTTAATTGTAATTG
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