CK740046

Overview
NameCK740046
Unique NameCK740046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7428 contig Csv1_Contig7428:250..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.896e-52
Identity = 79/108 (73.15%), Postives = 89/108 (82.41%), Query Frame = 1
Query:  103 RYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELK 426
            RYV+FKID          TG P ESY+DF A+LP+NDCRYAVYDFD+VTSENCQKSKIFF AWSPSTS IRAK+LY+TSKD+  REL GIHYEIQATDPTE+DLE L+
Sbjct:   35 RYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLR 142          

HSP 2 Score: 56.9954 bits (136), Expect = 3.896e-52
Identity = 27/33 (81.82%), Postives = 27/33 (81.82%), Query Frame = 3
Query:    3 SFRGLSRPNATSGMGVADHSKNAFTELQRKKVH 101
            SFRGLSRPNA SGMGVAD SK  F ELQRKK H
Sbjct:    2 SFRGLSRPNAISGMGVADESKTTFLELQRKKTH 34          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 9.878e-48
Identity = 92/123 (74.80%), Postives = 103/123 (83.74%), Query Frame = 1
Query:   70 HSRNC----KGRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELK 426
            HS+N     K ++  RYVIFKID          TGGPAES+++FAAALPENDCRYAVYDFD+VTSENCQKSKIFFIAWSP +SRIRAKMLYATSK+RFRRELDG+HYEIQATDPTEMDLE L+
Sbjct:   17 HSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLR 139          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.886e-46
Identity = 77/108 (71.30%), Postives = 90/108 (83.33%), Query Frame = 1
Query:  103 RYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELK 426
            RYVIFKID          TG   ES++DF  +LPE+DCRYA+YDFD+VT ENCQKSKIFF+AWSPS SRIRAKMLYATSK+RFRRELDG+HYEIQATDP+E+D+E L+
Sbjct:   34 RYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLR 141          

HSP 2 Score: 37.7354 bits (86), Expect = 2.886e-46
Identity = 18/28 (64.29%), Postives = 20/28 (71.43%), Query Frame = 3
Query:   18 SRPNATSGMGVADHSKNAFTELQRKKVH 101
            SR NA+SG+GVA   K  F ELQRKK H
Sbjct:    6 SRANASSGIGVAAECKQTFLELQRKKSH 33          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 5.766e-44
Identity = 79/108 (73.15%), Postives = 89/108 (82.41%), Query Frame = 1
Query:  103 RYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELK 426
            RYVIFKI+          TG   ESY+DF A+LPENDCRYA+YDFD+VT EN QKSKIFFIAWSPSTSRIRAKMLY+TSKDR ++ELDG HYEIQATDPTE+DLE L+
Sbjct:   34 RYVIFKIEEKQKQVVVEKTGATTESYDDFLASLPENDCRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTEVDLEVLR 141          

HSP 2 Score: 31.5722 bits (70), Expect = 5.766e-44
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 3
Query:   18 SRPNATSGMGVADHSKNAFTELQRKK 95
            S  NA+SGMGVA   ++ F ELQ KK
Sbjct:    6 SHSNASSGMGVAPDIRDTFLELQMKK 31          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.430e-38
Identity = 71/122 (58.20%), Postives = 94/122 (77.05%), Query Frame = 1
Query:   64 KMHSRNCKGRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELKT 429
            K+     K +R  R++++KI+           G P ESYEDFAA+LPEN+CRYAVYDFD+VT+ENCQKS+IFFIAW P T+R+R+KM+YA+SKDRF+RELDGI  E+QA DPTEM L+ +++
Sbjct:   15 KLRFLELKAKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASLPENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQS 136          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.439e-38
Identity = 72/114 (63.16%), Postives = 89/114 (78.07%), Query Frame = 1
Query:   85 KGRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELK 426
            K R+  RYVIFKID          TG P ESY+DF A+LP +DCRYAVYD D+V+ +NC+KSKIFFI+WSPS SRIRAK +YA S+++FR ELDG+H+EIQATDP +MDLE L+
Sbjct:   32 KRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLPADDCRYAVYDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLR 145          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.160e-38
Identity = 71/121 (58.68%), Postives = 91/121 (75.21%), Query Frame = 1
Query:   64 KMHSRNCKGRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELK 426
            K+     K +R  R+++FKID           G P E+YEDF  ++PE++CRYAVYD+D+ T ENCQKSKIFFIAWSP TSR+R+KMLYA+SKDRF+RELDGI  E+QATDP+EM L+ +K
Sbjct:   15 KLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIK 135          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.581e-37
Identity = 69/122 (56.56%), Postives = 93/122 (76.23%), Query Frame = 1
Query:   64 KMHSRNCKGRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELKT 429
            K+     K +R  R++++KI+           G P  +YEDFAA+LP ++CRYA+YDFD+VT+ENCQKSKIFFIAW P  +++R+KM+YA+SKDRF+RELDGI  E+QATDPTEMDL+ LK+
Sbjct:   15 KLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKS 136          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.696e-37
Identity = 69/121 (57.02%), Postives = 92/121 (76.03%), Query Frame = 1
Query:   64 KMHSRNCKGRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELK 426
            K+     K +R  R++I+KID           G P  +Y+DFAA+LP N+CRYA++D+D+VT ENCQKSKIFFIAWSP TSR+R+KM+YA+SKDRF+RELDGI  E+QATDPTE+ L+ ++
Sbjct:   15 KLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLPANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIR 135          
BLAST of CK740046 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.599e-37
Identity = 66/114 (57.89%), Postives = 90/114 (78.95%), Query Frame = 1
Query:   85 KGRRFTRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELK 426
            K +R  R+++FKID           G P E+Y+DF +++P+++CRYAVYDFD+ T +NCQKSKIFFIAWSP TSR+R+KMLYA+SKDRF+RE++GI  E+QATDP+EM L+ +K
Sbjct:   22 KAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIK 135          
The following BLAST results are available for this feature:
BLAST of CK740046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ADF6_ARATH3.896e-5273.15Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF_VITVI9.878e-4874.80Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
ADF11_ORYSJ2.886e-4671.30Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF2_ORYSJ5.766e-4473.15Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]
ADF1_PETHY1.430e-3858.20Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF10_ORYSJ2.439e-3863.16Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]
ADF10_ARATH4.160e-3858.68Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]
ADF4_ARATH1.581e-3756.56Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]
ADF7_ORYSJ2.696e-3757.02Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF8_ARATH4.599e-3757.89Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6540 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740046 ID=CK740046; Name=CK740046; organism=Citrus sinensis; type=EST; length=460bp
TGTCTTTCAGAGGACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTT
GCTGATCACAGCAAAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCA
CCCGTTATGTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTT
GAGAAGACTGGTGGCCCCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTT
GCCTGAGAATGATTGTCGATATGCTGTATATGACTTTGACTATGTGACTT
CTGAGAATTGTCAGAAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCA
ACCTCTAGAATCCGTGCCAAGATGCTGTACGCCACATCTAAAGACAGATT
TCGACGGGAGCTGGATGGTATCCACTATGAGATTCAGGCTACTGATCCTA
CAGAGATGGATCTTGAAGAGCTTAAAACCGTGCAACTGAAGAGTCTGCAG
TTTTGCAGTT
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